Institut de Génétique et Microbiologie

CRISPR details


Home About CRISPRs News FAQs Help Contact Us Examples IGM
Université Paris Sud

Navigation

Home page
CRISPRs database
Browse CRISPRs
BLAST CRISPRs
FlankAlign
CRISPRs utilities
My CRISPRs DB
CRISPRs finder
CRISPRs comparison

Other Tools

CRISPRcompar
CRISPRtionary
CRISPRfinder

GPMS Links

GPMS Team
Tandem Repeats DB
MLVA Web Service


NC_003212_2                                                                                                                 top


Strain : Listeria innocua Clip11262 RefSeq :NC_003212 (chromosome circular)
CRISPR id : NC_003212_2
DR consensus (36 bp) : GTTTTGTTAGCATTCAAAATAACATAGCTCTAAAACNumber of repetitions :11
Begin Position : 2768992 End Position : 2769687

2768992TGGTTTTTAGTATTCGAAATAGCATAGCTCTAAAACTATTGCATAGATACTAATGTTTCCACTTGT 2769057
2769058GTTTTGTTAGCATTCAAAATAACATAGCTCTAAAACAACATGAACAGAGATTCAGCATCGTTGCTA 2769123
2769124GTTTTGTTAGCATTCAAAATAACATAGCTCTAAAACTTGTATTATTTTGGTGATTGCCTTTCTGTA 2769189
2769190GTTTTGTTAGCATTCAAAATAACATAGCTCTAAAACTTTTCCGAGCGCTGCATCTTTTATACTGTT 2769255
2769256GTTTTGTTAGCATTCAAAATAACATAGCTCTAAAACCTTGCTTCTCTTGTTGTTCCTCTATCCATT 2769321
2769322GTTTTGTTAGCATTCAAAATAACATAGCTCTAAAACATTTATTATGAGTTTGGGACTGGTGAGAAA 2769387
2769388GTTTTGTTAGCATTCAAAATAACATAGCTCTAAAACTATAATGAGTTAGATGGCATTATATGCGAC 2769453
2769454GTTTTGTTAGCATTCAAAATAACATAGCTCTAAAACTCGACGATTTAACAGATTTTACAGATGCTT 2769519
2769520GTTTTGTTAGCATTCAAAATAACATAGCTCTAAAACATAATGCAGTAAATAAAGAAATACTTTGCA 2769585
2769586GTTTTGTTAGCATTCAAAATAACATAGCTCTAAAACTATCCTAGGCAAAGTTACCAAAGCGCTACG 2769651
2769652GTTTTGTTAGCATTCAAAATAACATAGCTCTAAAAC2769687
Left flanking sequence : Till position 2768992 (length bp)
CAGTGCTGCTTTTGAGGCGAGGTAGTGGTATTGTGTCATGTGTTGGGACCTCTCTTTCATAATGGTTTAA
CTCTTTCTAGCTGGAGTAGATTGAGAGATG
Right flanking sequence : From position 2769687 (length bp)
CTCGTAGAATTTTTTATTCTCCTAGATTTCGTAATCGCGCCATTCATCCATAGCAAGATTTCAATTTTGA
ATGCTTATTTTATGGTTCACATAAAATCTA
Print the CRISPR sequence : From position bp To position bp