Institut de Génétique et Microbiologie

CRISPR details


Home About CRISPRs News FAQs Help Contact Us Examples IGM
Université Paris Sud

Navigation

Home page
CRISPRs database
Browse CRISPRs
BLAST CRISPRs
FlankAlign
CRISPRs utilities
My CRISPRs DB
CRISPRs finder
CRISPRs comparison

Other Tools

CRISPRcompar
CRISPRtionary
CRISPRfinder

GPMS Links

GPMS Team
Tandem Repeats DB
MLVA Web Service


NC_006177_3                                                                                                                 top


Strain : Symbiobacterium thermophilum IAM 14863 RefSeq :NC_006177 (chromosome circular)
CRISPR id : NC_006177_3
DR consensus (29 bp) : GTCGTCCCCACGCGCGTGGGGGTGAACCGNumber of repetitions :58
Begin Position : 725421 End Position : 728938

725421GTCGTCCCCACGCGCGTGGGGGTGAACCGCTGTTCAAGCGTCGTAGTCGCAAACCGAAGGT 725481
725482GTCGTCCCCACGCGCGTGGGGGTGAACCGTCCAGGGCCCACCACCAGAGCAGGTGCAGGTGG 725543
725544GTCGTCCCCACGCGCGTGGGGGTGAACCGACGGCCGTTCGCAGGGCGGAGTCCGGTGCCAT 725604
725605GTCGTCCCCACGCGCGTGGGGGTGAACCGTCGCCCCTGCAGCTCATCTACCTGCCCCGGGG 725665
725666GTCGTCCCCACGCGCGTGGGGGTGAACCGGAGGGGTGATCATGAACGAGGATGAACTGCGT 725726
725727GTCGTCCCCACGCGCGTGGGGGTGAACCGCGTTGCTTGCGTCGTCATACCGCTCAACAGTAGC 725789
725790GTCGTCCCCACGCGCGTGGGGGTGAACCGTGAGGCTGCGTAGATGGTGCGTGCGGTGCGGAA 725851
725852GTCGTCCCCACGCGCGTGGGGGTGAACCGGCACCAGCGGAGGAGCCTCACCGCCCCTCACC 725912
725913GTCGTCCCCACGCGCGTGGGGGTGAACCGAGGGGTTCACCGCCCTGGATGTGCTCCGGTCC 725973
725974GTCGTCCCCACGCGCGTGGGGGTGAACCGGACGGTGGTCAGCCAACGATGACGGAGTGGGA 726034
726035GTCGTCCCCACGCGCGTGGGGGTGAACCGTGCTGAACGCTCGTCGGTTCTGCAACAACCTTC 726096
726097GTCGTCCCCACGCGCGTGGGGGTGAACCAGGGTATGGCACCGAACACCCACAAACGGGGTTC 726158
726159GTCGTCCCCACGCGCGTGGGGGTGAACCGCTGGACGGTATGCCCTGTCTTTGGCTCGTGAAC 726220
726221GTCGTCCCCACGCGCGTGGGGGTGAACCGCGGTCAACAAGGGCAAGGCCTGGGTCCACCC 726280
726281GTCGTCCCCACGCGCGTGGGGGTGAACCGGTGGCGTCATCGAAGTTGATCACGTCCGCAGC 726341
726342GTGGTCCCCACGCGCGTGGGGGTGAACCGGAGTGCGAGAGACCATGACGCGACTTCTTTGC 726402
726403GTCGTCCCCACGCGCGTGGGGGTGAACCGCGCCAGGAACATGCCCCGGAGCGTCAGCCGGT 726463
726464GTCGTCCCCACGCGCGTGGGGGTGAACCGGTGTACTGCATCTACGTGGACGGCAATCTTCG 726524
726525GTCGTCCCCACGCGCGTGGGGGTGAACCGCACATCATCGGCCTCCTGGGCCACCCTGGACAGC 726587
726588GTCGTCCCCACGCGCGTGGGGGTGAACCGAACTCGCTCAGACAGTCGGTGCTGCACCAGTT 726648
726649GTCGTCCCCACGCGCGTGGGGGTGAACCGGACATTCTGGCACCGGGCGGTGTGGACCGGTCC 726710
726711GTCGTCCCCACGCGCGTGGGGGTGAACCGAAGCGCAAGGCGAGCCTTAAACGAGAGTTGTC 726771
726772GTCGTCCCCACGCGCGTGGGGGTGAACCGTCCGGCATCCCAGCCCGCCTGGAGTGGGTCGA 726832
726833GTCGTCCCCACGCGCGTGGGGGTGAACCGCTAGGGAGGTATCGCCATGAAGACGAAACGTC 726893
726894GTCGTCCCCACGCGCGTGGGGGTGAACCGTTCGAGAGGAGGGAGAGAATGGAGCGGCGCCA 726954
726955GTCGTCCCCACGCGCGTGGGGGTGAACCGTTGCGTAACGCCTACAAAGCTAGGGAGGTATC 727015
727016GTCGTCCCCACGCGCGTGGGGGTGAACCGCGATCCGTCAGACATGATCCAGTACCCCTGCG 727076
727077GTCGTCCCCACGCGCGTGGGGGTGAACCGCTCTTTCCGGTCAGGTCGTCCCCTACCTCGAT 727137
727138GTCGTCCCCACGCGCGTGGGGGTGAACCGGCGTGATCCCCGGTCGCCACGGCGAACTCTGG 727198
727199GTCGTCCCCACGCGCGTGGGGGTGAACCGGAGGAGGGTTTCTCCGTGACCATCCTAGAGAA 727259
727260GTCGTCCCCACGCGCGTGGGGGTGAACCGTGCCTGCAGGTGCTGTTCAGCCTCCTGCTGGC 727320
727321GTCGTCCCCACGCGCGTGGGGGTGAACCGGCGAGACCATCTACCCATGGGAGGCCGGGCCC 727381
727382GTCGTCCCCACGCGCGTGGGGGTGAACCGTGCTCCAGGGCCTCGCCCATGGCCGACGCCGGC 727443
727444GTCGTCCCCACGCGCGTGGGGGTGAACCGAGCTGCTCAAAAGGAGGGAGAGTGCCATGAC 727503
727504GTCGTCCCCACGCGCGTGGGGGTGAACCACCAGCTGAGCCGCTTTAAGCATCGCTGTCGCC 727564
727565GTCGTCCCCACGCGCGTGGGGGTGAACCGTCCCTCAGCAGCTGACCTGCCAGGGCGTAAAT 727625
727626GTCGTCCCCACGCGCGTGGGGGTGAACCGTCGCGGAGGCCGAACGCCGGCAGGCCGCCGGC 727686
727687GTCGTCCCCACGCGCGTGGGGGTGAACCGCACGTAGCAGGAGGCGAGATGAGAGCAGCCGTG 727748
727749GTCGTCCCCACGCGCGTGGGGGTGAACCGATCTCCAACCGTGAGGCGGCCGAATGGATCAA 727809
727810GTCGTTCCCACGCGCGTGGGGGTGAACCGGCAACGTGCATCTGGCTACCAAGACCCTGGTC 727870
727871GTCGTCCCCACGCGCGTGGGGGTGAACCGCGGCGCCCGACCGGCGACATTCTCGTGCGACT 727931
727932GTCGTCCCCACGCGCGTGGGGGTGAACCGGAAACCTGCTGGTACATCACTTACACCTACCG 727992
727993GTCGTCCCCACGCGCGTGGGGGTGAACCGTCGTCCTGCCAGCCGCCCACCCACTTAATCCC 728053
728054GTCGTCCCCACGCGCGTGGGGGTGAACCGATGAAGCGTCGTCACATGAGAGTTCGTCCTGC 728114
728115GTCGTCCCCACGCGCGTGGGGGTGAACCGTCCGCCCGGGCCACCGTGAACGGCAACAGCCTCC 728177
728178GTCGTCCCCACGCGCGTGGGGGTGAACCGATGAGCAGGGTCCCGTCCAGCTCAGCCGCTAC 728238
728239GTCGTCCCCACGCGCGTGGGGGTGAACCGTCGAGGAACAGAACCGGGCGGCCCAGAAGCTC 728299
728300GTCGTCCCCACGCGCGTGGGGGTGAACCGGTGACCAGCTACCTGTACCACCCACCCAAGCA 728360
728361GTCGTCCCCACGCGCGTGGGGGTGAACCGCGGGCCGCCAAGGAGGCGATCGAGGCCTCCCAGC 728423
728424GTCGTCCCCACGCGCGTGGGGGTGAACCGCGCCGCGAGCAGGCCATCATGACCCTCGCCGC 728484
728485GTCGTCCCCACGCGCGTGGGGGTGAACCGGCCCTGCCCAAGCACATCACGGCCGAGCGCC 728544
728545GTCGTCCCCACGCGCGTGGGGGTGAACCGATAAGGGTCTTCACCGGATGACACCTCCGGAAC 728606
728607GTCGTCCCCACGCGCGTGGGGGTGAACCGCTGCCCCTCCCTGATGATCCGGCCGGGGGCCC 728667
728668GTCGTCCCCACGCGCGTGGGGGTGAACCGGAGGCGGCGCAGAATATCGCTTACGGCGCT 728726
728727GTCGTCCCCACGCGCGTGGGGGTGAACCGGGCCCGAGCGGCCTTGTCCACGCCCTGCAGGC 728787
728788GTCGTCCCCACGCGCGTGGGGGTGAACCGGACGCTGCCAGCATCCAGCAGTTGGGCTGCCA 728848
728849GTCGTCCCCACGCGCGTGGGGGTGAACCGTCGGGAATTACCGTGCTCTACACGGCGCAGGA 728909
728910GTCGTCCCCACGCGCGTGGGGGCACGCCC728938
Left flanking sequence : Till position 725421 (length bp)
TCCCACCATGTATCATTGGTTCTGACTGATGCTTTTTCAATGGGTTTCCATTGCACGAAGTCCGGGTTAT
TCACGCGAAACTTGAGCTAGCGCTTCGTCC
Right flanking sequence : From position 728938 (length bp)
AAAGATCATCATGGGTTCGTCGACCTCATCTTGTCTCCCAGGCAGGTGGGGACATACCGTTCGGCGATTA
CTGGGTTAAGCCGGTGAGCCAGTCGTGCAC
Print the CRISPR sequence : From position bp To position bp