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CRISPRs details
NC_006366_1
Flanking alignement tool
Page manual
  
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NC_006366_1                                                                                                                 
top
Strain :
Legionella pneumophila str. Lens
RefSeq :
NC_006366 (plasmid pLPL )
CRISPR id :
NC_006366_1
DR consensus (28 bp) :
TTTCTAAGCTGCCTGTACGGCAGTGAAC
Number of repetitions :
54
Begin Position :
43276
End Position :
46483
43276
CTTCTAAGCTGCCTGTACGGCAGTGAAC
ATATGTTTCGAATTCTTGATTAAAAATATCGC
43335
43336
TTTCTAAGCTGCCTGTACGGCAGTGAAC
AGAAGACCTTTTAAGCGCCGTTGTCGGCATTT
43395
43396
TTTCTAAGCTGCCTGTACGGCAGTGAAC
AGGTCTTTTTGCCCGTTTTTTTATCTTCATGT
43455
43456
TTTCTAAGCTGCCTGTACGGCAGTGAAC
TACGTCTTTAGATGAGGTCATAACCACGTATT
43515
43516
TTTCTAAGCTGCCTGTACGGCAGTGAAC
TGTCTCTGTTTGCTTTGGGGCACAATCCAGCA
43575
43576
TTTCTAAGCTGCCTGTACGGCAGTGAAC
AGAATCCTGAGGATTATGTTTTGTTCGAATTG
43635
43636
TTTCTAAGCTGCCTGTACGGCAGTGAAC
GTTAGGTTCCGGAGGCGGTGACACGGCGGACA
43695
43696
TTTCTAAGCTGCCTGTACGGCAGTGAAC
GCGCAAAGGTTAGAAAGCAAGTCATGAGGTAA
43755
43756
TTTCTAAGCTGCCTGTACGGCAGTGAAC
AGTTTATCTGATGTTGAAAGATTAACTGTTAA
43815
43816
TTTCTAAGCTGCTTGTACGGCAGTGAAC
GATAAAAGCGGTCTATGCGGCCGACAAATTCC
43875
43876
TTTCTAAGCTGCCTGTACGGCAGTGAAC
ACATTTGTGTTAGGTTTAGTTGCGCCTCTTGT
43935
43936
TTTCTAAGCTGCCTGTACGGCAGTGAAC
CTTATAAGCCATCAAATGCTGCTGGAACTGCT
43995
43996
TTTCTAAGCTGCCTGTACGGCAGTGAAC
TCTACAGAAAGAAGGCTATATCTAAATAGATA
44055
44056
TTTCTAAGCTGCCTGTACGGCAGTGAAC
ACACCAAGTTTAGGGCGTATGTCGGCGGCTTT
44115
44116
TTTCTAAGCTGCCTGTACGGCAGTGAAC
CTTGAGTTGCAGACCCCGGGTCTTGCTGCTGA
44175
44176
TTTCTAAGCTGCCTGTACGGCAGTGAAC
CGCCGGTATATGACGCTGAATTAAATTTTATA
44235
44236
TTTCTAAGCTGCCTGTACGGCAGTGAAC
ATTGACGATAGCGTTACCTACTAAGTGCAAGC
44295
44296
TTTCTAAGCTGCCTGTACGGCAGTGAAC
CATGGAGTAATTATTAATCTAAGTTCAGGGCA
44355
44356
TTTCTAAGCTGCCTGTACGGCAGTGAAC
CAGGTAAAATATATTCGACTGAAATCTCAATC
44415
44416
TTTCTAAGCTGCCTGTACGGCAGTGAAC
CTGGTCGAGCTCGTCATAGCTAAGGGCTAGTA
44475
44476
TTTCTAAGCTGCCTGTACGGCAGTGAAC
TAGCAATTACTTGCTTTGCTTCTTCACATATC
44535
44536
TTTCTAAGCTGCCTGTACGGCAGTGAAC
GAAAGGGCAATAGTTAAGCGCATGGCACAAGC
44595
44596
TTTCTAAGCTGCCTGTACGGCAGTGAAC
TGACCCGTCAACTAAATGGTGGAGCACGTTTT
44655
44656
TTTCTAAGCTGCCTGTACGGCAGTGAAC
TGTATTTGTTTTTCAAGCTGCTCAAGCTCAGA
44715
44716
TTTCTAAGCTGCCTGTACGGCAGTGAAC
AATACCGGCACATTCACGGTGTAGGTGCACAT
44775
44776
TTTCTAAGCTGCCTGTACGGCAGTGAAC
TCTTCCGTACTTCTCACCATACTCACCACAGT
44835
44836
TTTCTAAGCTGCCTGTACGGCAGTGAAC
TTAACGAAAGGTTTATTTACAGTTCAAAATGA
44895
44896
TTTCTAAGCTGCCTGTACGGCAGTGAAC
ATGCTAGTACCTACCCTATCGTTCATGAATTA
44955
44956
TTTCTAAGCTGCCTGTACGGCAGTGAAC
TCTACAAAAGAGGCCATAAGAGCAACTCTCAA
45015
45016
TTTCTAAGCTGCCTGTACGGCAGTGAAC
ATTAGATGCCCAGCGTGTAAAGGGACTAAGAA
45075
45076
TTTCTAAGCTGCCTGTACGGCAGTGAAC
CTTTTACTGATTCTTCAACTATCTGTTCAATT
45135
45136
TTTCTAAGCTGCCTGTACGGCAGTGAAC
GTTAGGTTCTGGCGGCGGCGACACGGCAGACA
45195
45196
TTTCTAAGCTGCCTGTACGGCAGTGAAC
ATTAACAGCCTTCATCATTTCCAAGCCCGCAG
45255
45256
TTTCTAAGCTGCCTGTACGGCAGTGAAC
AATATGATGCGTGTAAAATATTAGAGCTGGAA
45315
45316
TTTCTAAGCTGCCTGTACGGCAGTGAAC
CCATTATCTGAGCAGATTAAAAAAATGGTAAT
45375
45376
TTTCTAAGCTGCCTGTACGGCAGTGAAC
GCTGAATGATTCTCCGAAAACCCCATCGAGTG
45435
45436
TTTCTAAGCTGCCTGTACGGCAGTGAAC
GTTCCCCATCTCTTGAGCAGAAAAACAATTTT
45495
45496
TTTCTAAGCTGCCTGTACGGCAGTGAAC
TTAGAGCAATACATACGAGATAATTATACGCC
45555
45556
TTTCTAAGCTGCCTGTACGGCAGTGAAC
TGTTTTATAGTGAGATTCGTTTAAGTCTGATA
45615
45616
TTTCTAAGCTGCCTGTACGGCAGTGAAC
AGAGTATAGGAAATTAGAAGCTGGAACAAAAA
45675
45676
TTTCTAAGCTGCCTGTACGGCAGTGAAC
CACCATATAAGAACAATCGAAGTTCCGAATGT
45735
45736
TTTCTAAGCTGCCTGTACGGCAGTGAAC
TTGTTTTAGGCAGTTTAAAAGGATTGTTTACA
45795
45796
TTTCTAAGCTGCCTGTACGGCAGTGAAC
CAACATCGGGGGGTTTAGCCTCAGCAACACCA
45855
45856
TTTCTAAGCTGCCTGTACGGCAGTGAAC
TGCTAGGAGAGTTATAAATGCTGATGTTGCTA
45915
45916
TTTCTAAGCTGCCTGTACGGCAGTGAAC
TTTACAATTCAGTTACAAATTAATTATTGCAA
45975
45976
TTTCTAAGCTGCCTGTACGGCAGTGAAC
TAAAGGCTGAATCACTTGCGGCCATGTACATA
46035
46036
TTTCTAAGCTGCCTGTACGGCAGTGAAC
TAGGCAAGTGGGATAAGCCTTACATGCAAAAA
46095
46096
TTTCTAAGCTGCCTGTACGGCAGTGAAC
GTAACTCAACAGCAGGGCCTTTCTGAGGCCAA
46155
46156
TTTCTAAGCTGCCTGTACGGCAGTGAAC
GTTATGCGAATGGTAGTTTGTCGGATTATTTT
46215
46216
TTTCTAAGCTGCCTGTACGGCAGTGAAC
TGTTAGATTTTTGTATGGGATCAGGTACTACA
46275
46276
TTTCTAAGCTGCCTGTACGGCAGTGAAC
GAAGGATCATTAGAAAATCTTTTACGCAAACT
46335
46336
TTTCTAAGCTGCCTGTACGGCAGTGAAC
GTAAGATTGTTTTTTCTCCTAATTCTGCATTA
46395
46396
TTTCTAAGCTGCCTGTACGGCAGTGAAC
CATCGAGCCACGGCAAAAATTGGTTTTTAAAA
46455
46456
TTTCTAAGCTGCCTGTACGGCAGTGAAC
46483
Left flanking sequence : Till position 43276 (length
bp)
AAATGGAGATTATAGTCATGATTAGACTTTCCTAATCAAAACAAGGTCAGGCCTTGGTCCGACCTTGCTG
CGTAGCGTGCTAACACCTTTAACATAATAA
Right flanking sequence : From position 46483 (length
bp)
TCTGCTCTAAATCTTAAAAAAATAGTTATAACAGAAAGTTAGCTGAAAAAAATCGATTTACCCAATATCT
TTCAGCTAATTTATAACCAATTGATTTTAA
Print the CRISPR sequence : From position
bp To position
bp