Institut de Génétique et Microbiologie

CRISPR details


Home About CRISPRs News FAQs Help Contact Us Examples IGM
Université Paris Sud

Navigation

Home page
CRISPRs database
Browse CRISPRs
BLAST CRISPRs
FlankAlign
CRISPRs utilities
My CRISPRs DB
CRISPRs finder
CRISPRs comparison

Other Tools

CRISPRcompar
CRISPRtionary
CRISPRfinder

GPMS Links

GPMS Team
Tandem Repeats DB
MLVA Web Service


NC_009616_2                                                                                                                 top


Strain : Thermosipho melanesiensis BI429 RefSeq :NC_009616 (chromosome circular)
CRISPR id : NC_009616_2
DR consensus (30 bp) : ATTTCAATTCCTCCAAGGTAAGGTAAAAACNumber of repetitions :8
Begin Position : 360035 End Position : 360533

360035ATTTCAATTCCTCCAAGGTAAGGTAAAAACAAAAAGCACTCAAAACGAGCGCCATATTTCGCCGTTA 360101
360102ATTTCAATTCCTCCAAGGTAAGGTAAAAACGCAGGAATGGCTAATTGAAACCTTACTGTTCCATCA 360167
360168ATTTCAATTCCTCCAAGGTAAGGTAAAAACACGAAAGCAATTCAGAAACTAACACAAATAGAGGC 360232
360233ATTTCAATTCCTCCAAGGTAAGGTAAAAACCAAAATAACAATGATGGTTTGTTTAATTGTTTTGTTTCT 360301
360302ATTTCAATTCCTCCAAGGTAAGGTAAAAACCAATATTCTTCCCAGCAATCTTGACAAAGCGCAAATTC 360369
360370ATTTCAATTCCTCCAAGGTAAGGTAAAAACTTTCAAGTCACTACTTGATGCGGATCCAATATATATT 360436
360437ATTTCAATTCCTCCAAGGTAAGGTAAAAACATTCAGCTGAGAACAATAGATACACACACACCAAATA 360503
360504ATTTCAATTCCTCCAAGGTAAGGTAAAAAC360533
Left flanking sequence : Till position 360035 (length bp)
AAACCCTATCAATAAATTTGTAAAATAATCAAATCCCAATATCTCAATTTTCTTCTAAAGCTAAAAAATT
TAATAAGCTACACTTACTTTTTAAAACTTC
Right flanking sequence : From position 360533 (length bp)
CATAGAATCCATTAATATTCTATCATATTTCTTTCTCAAGAGCAATACTTTTGAAACTATATCATATTAA
ATTTAACATAATTAACACAATGTATTCCTA
Print the CRISPR sequence : From position bp To position bp