Institut de Génétique et Microbiologie

CRISPR details


Home About CRISPRs News FAQs Help Contact Us Examples IGM
Université Paris Sud

Navigation

Home page
CRISPRs database
Browse CRISPRs
BLAST CRISPRs
FlankAlign
CRISPRs utilities
My CRISPRs DB
CRISPRs finder
CRISPRs comparison

Other Tools

CRISPRcompar
CRISPRtionary
CRISPRfinder

GPMS Links

GPMS Team
Tandem Repeats DB
MLVA Web Service


NC_009708_4                                                                                                                 top


Strain : Yersinia pseudotuberculosis IP 31758 RefSeq :NC_009708 (chromosome circular)
CRISPR id : NC_009708_4
DR consensus (28 bp) : TTTCTAAGCTGCCTGTGCGGCAGTGAACNumber of repetitions :27
Begin Position : 2726751 End Position : 2728338

2726751TTATTGGGCTGCCTGTGCGGCAGTGAACAGCTCTCGTCTCCCTGGCCGTCCAGCGTGTAA 2726810
2726811TTTCTAAGCTGCCTGTGCGGCAGTGAACCCGTGGACATTGCAAGCACTGCGGCTGTGCTT 2726870
2726871TTTCTAAGCTGCCTGTGCGGCAGTGAACGAAGTGCTGGCCAAGACCACCCAGATATTCGA 2726930
2726931TTTCTAAGCTGCCTGTGCGGCAGTGAACGAAAAGTATCGCTATGCCATCAACAATTTTAA 2726990
2726991TTTCTAAGCTGCCTGTGCGGCAGTGAACTTGAGTTATTTAAAAGATCTTATGAATTTACA 2727050
2727051TTTCTAAGCTGCCTGTGCGGCAGTGAACATAATTAATTGTTGTGCTTCATCCAACGTGTC 2727110
2727111TTTCTAAGCTGCCTGTGCGGCAGTGAACAAGTCCAGGAATTAAAAGCCGAGGTAGAAGAT 2727170
2727171TTTCTAAGCTGCCTGTGCGGCAGTGAACGCTAGAAATTTAAGAACACATGTACCCTATCA 2727230
2727231TTTCTAAGCTGCCTGTGCGGCAGTGAACTGGAAAGAACACACGTTACTGATGATTGGAAT 2727290
2727291TTTCTAAGCTGCCTGTGCGGCAGTGAACAACAATCAGGTTTACGTGATTGAACTCCGCAA 2727350
2727351TTTCTAAGCTGCCTGTGCGGCAGTGAACCTGGCGTGATAGATGGATTGATTGATATCAAT 2727410
2727411TTTCTAAGCTGCCTGTGCGGCAGTGAACATTGGTGAGACCATCAGCAGGAATGCTACTCA 2727470
2727471TTTCTAAGCTGCCTGTGCGGCAGTGAACTCGGTGTTTTCGTTGTAATGCTTCTCGGTATA 2727530
2727531TTTCTAAGCTGCCTGTGCGGCAGTGAACAGATGGCCTGATTGACCGCCTGCGTCATATCG 2727590
2727591TTTCTAAGCTGCCTGTGCGGCAGTGAACTACCATCATCGGCCTCGGAAGTTACTGTGTTA 2727650
2727651TTTCTAAGCTGCCTGTGCGGCAGTGAACTACAGGCGCACACAGGCCGCCGCTAAATCACA 2727710
2727711TTTCTAAGCTGCCTGTGCGGCAGTGAACTAACAACGAACGCAAGCGGAAATCCGGCTGGG 2727770
2727771TTTCTAAGCTGCCTGTGCGGCAGTGAACAAAAAGCACCGTATAATCATCCGAAGGTTGAC 2727830
2727831TTTCTAAGCTGCCTGTGCGGCAGTGAACCTTGCCCGTTACCACTAACCATTATTTCAATT 2727890
2727891TTTCTAAGCTGCCTGTGCGGCAGTGAACATATCCTCCTGATGCCACATCCGCTATTTTCT 2727950
2727951TTTCTAAGCTGCCTGTGCGGCAGTGAACATAGCATGACGGATATGACATTGATTCCAACC 2728010
2728011TTTCTAAGCTGCCTGTGCGGCAGTGAACACTGTACGGACTGGAGGAAGGCTTGGACGTTA 2728070
2728071TTTCTAAGCTGCCTGTGCGGCAGTGAACACCAGTAGCCCTTTAAAGGCATCTTTACCGAT 2728130
2728131TTTCTAAGCTGCCTGTGCGGCAGTGAACTCAACAACAGTACCCGACAAAATGCCGGGAAA 2728190
2728191TTTCTAAGCTGCCTGTGCGGCAGTGAACGATGACGAGATGGCGCGGCTGGCTAAGTCAGT 2728250
2728251TTTCTAAGCTGCCTGTGCGGCAGTGAACAGATGGTCAGTAAATTACCTTTCATTCCGCTA 2728310
2728311TTTCTAAGCTGCCTGTGCGGCAGTGAAC2728338
Left flanking sequence : Till position 2726751 (length bp)
GACGATAAAGAGAAACTTGCGCTGCTAAAAGCGTTGTTTGAATATGCCAAGGGATTAGTGAGTTAATATT
TGCAGATAAAACGCCGCCAGAGAGCTGAGA
Right flanking sequence : From position 2728338 (length bp)
AGTAAGATAATACGGATAACCCGATGTTTATCAATGAGCAATGGCGCAAAATGCGTAAAAACCCTTTTTT
TAGTGAAATACCTGAGTAGCATAAAAATCA
Print the CRISPR sequence : From position bp To position bp