Institut de Génétique et Microbiologie

CRISPR details


Home About CRISPRs News FAQs Help Contact Us Examples IGM
Université Paris Sud

Navigation

Home page
CRISPRs database
Browse CRISPRs
BLAST CRISPRs
FlankAlign
CRISPRs utilities
My CRISPRs DB
CRISPRs finder
CRISPRs comparison

Other Tools

CRISPRcompar
CRISPRtionary
CRISPRfinder

GPMS Links

GPMS Team
Tandem Repeats DB
MLVA Web Service


NC_009943_1                                                                                                                 top


Strain : Candidatus Desulfococcus oleovorans Hxd3 RefSeq :NC_009943 (chromosome circular)
CRISPR id : NC_009943_1
DR consensus (35 bp) : GTCGCAATCCCCTCTAACAGCGGGTCTCTTCCTTCNumber of repetitions :17
Begin Position : 860153 End Position : 861365

860153GCCGCAATCCATTCTAAAAATGGGTCTTTTCTTTCCGCCACGCCGGGAGCGCCGCACCCCAGTGCGGCACCCCCGG 860228
860229GTCCCAATCCCCTCTAACAGCGGGTCTCTTCCTTCGATTTACGGTATCGCCAACAGCTACGGTGAAGGGTCAAG 860302
860303GTCGCAATCCCCTCTAACAGCGGGTCTCTTCCTTCGTTTTGGCGGAACATTCACAACCGTCCTGGCCGG 860371
860372GTCGCAATCCCCTCTAACAGCGGGTCTCTTCCTTCCATGACTACAACATCAAGTAATTATGCTGAGATTCCCAA 860445
860446GTCGCAATCCCCTCTAACAGCGGGTCTCTTCCTTCGCGACACTAACAACGCGGAAATGAAGGCTGCAAAGGCCAA 860520
860521GTCGCAATCCCCTCTAACAGCGGGTCTCTTCCTTCCAGTTAGAAGAAAAGATGGCCAAGGCAGCTGAGGCTGAG 860594
860595GTCGCAATCCCCTCTAACAGCGGGTCTCTTCCTTCTTTTTATTAATCAATAAAAATGGAGGTTTGAGACATGAC 860668
860669GTCGCAATCCCCTCTAACAGCGGGTCTCTTCCTTCACGGTCAGCCGATTCAGATTCAGAAGACCTCGTTCACCA 860742
860743GTCGCAATCCCCTCTAACAGCGGGTCTCTTCCTTCGATTTCCCATTCATGAGGGACAGAACGTCATCATACGTTC 860817
860818GTCGCAATCCCCTCTAACAGCGGGTCTCTTCCTTCTGGTTATCGATGGTGTTGAATATAAATTGGTAAGAAAA 860890
860891GTCGCAATCCCCTCTAACAGCGGGTCTCTTCCTTCGGACTTTCCACGAAGTACTGAACACAAAAGATTT 860959
860960GTCGCAATCCCCTCTAACAGCGGGTCTCTTCCTTCCTTACCAGGATTTATTTCAAGAGGCCTGTGTTGCATAC 861032
861033GTCGCAATCCCCTCTAACAGCGGGTCTCTTCCTTCTGGGAAAATATTAAGAAAAGATCAGACTACGAACTATTTTTT 861109
861110GTCGCAATCCCCTCTAACAGCGGGTCTCTTCCTTCATTGCCGATTACCTGTCATATAACCTTACTGCGATTCA 861182
861183GTCGCAATCCCCTCTAACAGCGGGTCTCTTCCTTCAGAGCTTTGAGGTAGGCGATAAGGTCTGCTGGTGTGG 861254
861255GTCGCAATCCCCTCTAACAGCGGGTCTCTTCCTTCTTTATATCCTTCCTTCCCTAAATACTCTCTAATGTATTTTA 861330
861331GTCGCAATCCCCTCTAACAGCGGGTCTCTTCCTTC861365
Left flanking sequence : Till position 860153 (length bp)
AGGAGGCAAAGCCAATGGCCGCAACAACGGCAACGTTGCCAGGAAGAGGCAGGGGCGTTTTGGGGGGAGG
TAGGGCCGGGAATATTTTCTCCCTGCTCAG
Right flanking sequence : From position 861365 (length bp)
CGCGGCCTTTTTATCGGCAATAAAAACAACGGGCTCCAGCGGGTTTTCCGCGGACCGCTGCCGGTTTCCT
TTTCTTTCATCTTTTTACGCCTCCTTTTAT
Print the CRISPR sequence : From position bp To position bp