Institut de Génétique et Microbiologie

CRISPR details


Home About CRISPRs News FAQs Help Contact Us Examples IGM
Université Paris Sud

Navigation

Home page
CRISPRs database
Browse CRISPRs
BLAST CRISPRs
FlankAlign
CRISPRs utilities
My CRISPRs DB
CRISPRs finder
CRISPRs comparison

Other Tools

CRISPRcompar
CRISPRtionary
CRISPRfinder

GPMS Links

GPMS Team
Tandem Repeats DB
MLVA Web Service


NC_010483_2                                                                                                                 top


Strain : Thermotoga sp. RQ2 RefSeq :NC_010483 (chromosome circular)
CRISPR id : NC_010483_2
DR consensus (30 bp) : GTTTCCATACCTCTAAGGAACTATTGAAACNumber of repetitions :25
Begin Position : 557367 End Position : 559006

557367GTTTCCGTACCTCTAAGGAAGTATTGAAACTCGCAAAGAAATTCGAAACATTCGACGGAAAAATCGT 557433
557434GTTTCCATACCTCTAAGGAACTATTGAAACTGAAGGAATGGAGAAGCGTAACAATCTATTATAACG 557499
557500GTTTCCATACCTCTAAGGAACTATTGAAACGAAGCAGGAACTTTTGCAAGCTCTTAGCAGGGCATTCTA 557568
557569GTTTCCATACCTCTAAGGAACTATTGAAACGTGATCAAAAGGAGTTTGCAAGATGGCAGAGTAATTTT 557636
557637GTTTCCATACCTCTAAGGAACTATTGAAACTCGGGACTGTAAACGAGTGCTCCGGCGGAAATGCCCAA 557704
557705GTTTCCATACCTCTAAGGAACTATTGAAACAAAGTAATGAGCTGGGTCAAAATTGCCAAAGAAACATA 557772
557773GTTTCCATACCTCTAAGGAACTATTGAAACCCTCCCTCACAGCAAGTCTGCGAGTTCTAAAAGGT 557837
557838GTTTCCATACCTCTAAGGAACTATTGAAACCTTGTATGCATAGTAAGAATTCTTCAATCCTTTCTTTC 557905
557906GTTTCCATACCTCTAAGGAACTATTGAAACATGCGACCTTTATAAGAAACTCGACTGGTTTTTCGA 557971
557972GTTTCCATACCTCTAAGGAACTATTGAAACTCCTGAAAACAAGGAACAACAGTAGCACGAAAAGTG 558037
558038GTTTCCATACCTCTAAGGAACTATTGAAACTTAAACGTGCAAACAGATTGATGAAGGGAAAGTCGGC 558104
558105GTTTCCATACCTCTAAGGAACTATTGAAACCAAGCATGAATGGACACTTGCACCACAGCCAGGCTT 558170
558171GTTTCCATACCTCTAAGGAACTATTGAAACGATCCACGTCCTTGGGGAAGAAGGATACATATCCCCCA 558238
558239GTTTCCATACCTCTAAGGAACTATTGAAACGAGAAGAACAAAAAGGAGAAGATCAAGAAGAAAAAGAAGG 558308
558309GTTTCCATACCTCTAAGGAACTATTGAAACAGGGAAACCCGTTCATCGAATTCCCTCTGCACGCACAAA 558377
558378GTTTCCATACCTCTAAGGAACTATTGAAACCTCCAGCATTAAGCAACTTGCTGACGAAATCACCTT 558443
558444GTTTCCATACCTCTAAGGAACTATTGAAACGGTTTAAAACGAACGATGGCTGGATAGCTGTAGAGTT 558510
558511GTTTCCATACCTCTAAGGAACTATTGAAACCGTGTCCTGGTACTGGCTTATCGACACAGACGAAG 558575
558576GTTTCCATACCTCTAAGGAACTATTGAAACGCAAGCGATTTTCTGCGTCACCAAAGCACGTGGGGATTG 558644
558645GTTTCCATACCTCTAAGGAACTATTGAAACAGTTTGACCTTTCACAAGAGAGAAGGGATTATGAAG 558710
558711GTTTCCATACCTCTAAGGAACTATTGAAACGTGCTCCCTTACTCTTTCATATCCACTACAAACAT 558775
558776GTTTCCATACCTCTAAGGAACTATTGAAACGTGCTCCCTTACTCTTTCATATCCACTACAAACAT 558840
558841GTTTCCATACCTCTAAGGAACTATTGAAACGCTGGCACCATCTTCCGAACTCAAATACCGTCGCCAGG 558908
558909GTTTCCATACCTCTAAGGAACTATTGAAACTAAGCTCGCCTCCTTTTTTAAATTAAATCGTCCAGATT 558976
558977GTTTCCATACCTCTAAGGAACTATTGAAAC559006
Left flanking sequence : Till position 557367 (length bp)
TACCATACATTGAAACAAAAAAGCGCCCCTCACGGGCACTTTTGTTTAAAGGATGCATTGAAATTTGTTG
AGCTTAGCGGAGATCATCGATACAAGACAA
Right flanking sequence : From position 559006 (length bp)
CCGTTGAGTTCAAGAGAAATTATACCACAAACACACTCTGAAAGCAAGATGTTTTTTTATCTTCCATATC
CTCCCTTTCCATAAACCATTCTAACACACA
Print the CRISPR sequence : From position bp To position bp