Institut de Génétique et Microbiologie

CRISPR details


Home About CRISPRs News FAQs Help Contact Us Examples IGM
Université Paris Sud

Navigation

Home page
CRISPRs database
Browse CRISPRs
BLAST CRISPRs
FlankAlign
CRISPRs utilities
My CRISPRs DB
CRISPRs finder
CRISPRs comparison

Other Tools

CRISPRcompar
CRISPRtionary
CRISPRfinder

GPMS Links

GPMS Team
Tandem Repeats DB
MLVA Web Service


NC_011295_3                                                                                                                 top


Strain : Coprothermobacter proteolyticus DSM 5265 RefSeq :NC_011295 (chromosome circular)
CRISPR id : NC_011295_3
DR consensus (30 bp) : GTTTCAATCCCTTGTAGGTAAGCTAGAAACNumber of repetitions :17
Begin Position : 1263870 End Position : 1264966

1263870GTTTCAATCCCTTGTAGGTAAGCTAGAAACGCTTTCTTCGAGTCAATGGACTCTGTAACACGTTCCTTGA 1263939
1263940GTTTCAAACCCTTGTAGGTAAGCTAGAAACAAGCCTTGCTGTGAGAGAAGACTTTATATGCCAGGGGC 1264007
1264008GTTTCAATCCCTTGTAGGTAAGCTAGAAACCAATGAGTCTGGGGTTGAAATGAATAAGAGGAGCAT 1264073
1264074GTTTCAATCCCTTGTAGGTAAGCTAGAAACCACGCTATGTCTTTAACACGCTGTTCCACCATCATA 1264139
1264140GTTTCAATCCCTTGTAGGTAAGCTAGAAACATGGCAGGAATTGTATTTCGTAGTGGCGAGCAAAAAG 1264206
1264207GTTTCAATCCCTTGTAGGTAAGCTAGAAACTTTTCAATTCCTGGTTGTACGACTCACCAATCTTCA 1264272
1264273GTTTCAATCCCTTGTAGGTAAGCTAGAAACTTTTTAACTGGAGGACTAATCCTCCAGTTCCTCCAA 1264338
1264339GTTTCAATCCCTTGTAGGTAAGCTAGAAACTGGATAGTTATGGCGATTCAATGTACAGCAATCATAA 1264405
1264406GTTTCAATCCCTTGTAGGTAAGCTAGAAACTTTAATTAGGCCGAAACAAGGATTTAAGGAATTGAT 1264471
1264472GTTTCAATCCCTTGTAGGTAAGCTAGAAACCCGACGAGGTATTGTTGGGAAGAGTTAGGGAGTATA 1264537
1264538GTTTCAATCCCTTGTAGGTAAGCTAGAAACTTTTTTACGGTGAGAGAGAAGTGCTAAGGGGACATAT 1264604
1264605GTTTCAATCCCTTGTAGGTAAGCTAGAAACTTTGCTTTTCAAAATGCCGAACGCAGACATAAGGCC 1264670
1264671GTTTCAATCCCTTGTAGGTAAGCTAGAAACATTTGCGAGAATGGTGCTTGCGATGTATTCACGAT 1264735
1264736GTTTCAATCCCTTGTAGGTAAGCTAGAAACTACCTACACAACTGCTATGCTCACAAAACGACATGCCG 1264803
1264804GTTTCAATCCCTTGTAGGTAAGCTAGAAACTCTAAATTTTTTACACCTTCCTTACTCACGAAGTTT 1264869
1264870GTTTCAATCCCTTGTAGGTAAGCTAGAAACACTGAACCTTCACCGCGCCGAACTACCTCTTCATCGA 1264936
1264937GTTTCAATCCCTTGTAGGTAAGCTAGAAAC1264966
Left flanking sequence : Till position 1263870 (length bp)
GCTCTTCGCTTATCTACTCACGCCCTTCACAGATCTCCAGAATCTTCTACCTGTACGTCATTTCGCACTT
CACCGTTCAGCTCAACCGTGAAAGAAGGGG
Right flanking sequence : From position 1264966 (length bp)
ATTTGCGAGAATGGTGCTTGCGATGTATTTGCAAATGGTGGTGAAGTTGCAGAATACTCTTCCATAGGAC
CGAGCTTAAATGGAGAAATACAGCCTGACT
Print the CRISPR sequence : From position bp To position bp