Institut de Génétique et Microbiologie

CRISPR details


Home About CRISPRs News FAQs Help Contact Us Examples IGM
Université Paris Sud

Navigation

Home page
CRISPRs database
Browse CRISPRs
BLAST CRISPRs
FlankAlign
CRISPRs utilities
My CRISPRs DB
CRISPRs finder
CRISPRs comparison

Other Tools

CRISPRcompar
CRISPRtionary
CRISPRfinder

GPMS Links

GPMS Team
Tandem Repeats DB
MLVA Web Service


NC_012440_2                                                                                                                 top


Strain : Persephonella marina EX-H1 RefSeq :NC_012440 (chromosome circular)
CRISPR id : NC_012440_2
DR consensus (29 bp) : CTTTCTATCCCACTTAGTTCAAAGAAAACNumber of repetitions :12
Begin Position : 1254083 End Position : 1254830

1254083TTTTATCTTCCACTTAGTTCAAAGAAAACTGGCTTTGTTCTTCGTCCTGATGTTCCTAAGGACTTGCAG 1254151
1254152CTTTCTATCCCACTTAGTTCAAAGAAAACAATCAGTCTATAGCAACTTCACCTTTACCTTAAAGG 1254216
1254217CTTTCTATCCCACTTAGTTCAAAGAAAACTTCATCTATGGGGAGCAAAGAAAAAACAGAGACTCTT 1254282
1254283CTTTCTATCCCACTTAGTTCAAAGAAAACGAAGACAAAGAAGGAGTTAGATATTTCATCTCAGCTGG 1254349
1254350CTTTCTATCCCACTTAGTTCAAAGAAAACCATTGTATTAACATTCAAGAGATTTGTCAATAGGTA 1254414
1254415CTTTCTATCCCACTTAGTTCAAAGAAAACTTCAACATTGCTTTCTATTTGGAATGACAAATACGG 1254479
1254480CTTTCTATCCCACTTAGTTCAAAGAAAACCCCTCAACACCTTTAGCTTTCAGTTCGTCTATTTTT 1254544
1254545CTTTCTATCCCACTTAGTTCAAAGAAAACAAGTTACAGGGAATGTTCCTCTGGTTCTTAGAGG 1254607
1254608CTTTCTATCCCACTTAGTTCAAAGAAAACAGGACTGGTTACCTGTCTTTTTTCTTATTTTTTTG 1254671
1254672CTTTCTATCCCACTTAGTTCAAAGAAAACCTCCATTTTCTTTTCCTCCTTTTTTGTTTGATCG 1254734
1254735CTTTCTATCCCACTTAGTTCAAAGAAAACTGAGCAGGCAAATATGCTGATAGCTGTTTTCGTTGATA 1254801
1254802CTTTCTATCCCACTTAGTTCAAAGAAAAC1254830
Left flanking sequence : Till position 1254083 (length bp)
TCTTCAGGATGAGAGATTAACGAGCGTTTAGAAGGTTTTAAAAAGATTCTGTATTTATTTGAAGATAAAA
TACATATAAATCTTTCATAAAGGTAATTTT
Right flanking sequence : From position 1254830 (length bp)
CCATCATTCTAACGATATAAAAAAATATAGTGATTTGGCAAGCTATAAAGCTATTTAGAGAAGGATCATT
CTACTTTTATACATCTTTGCAAAAATAAGT
Print the CRISPR sequence : From position bp To position bp