Institut de Génétique et Microbiologie

CRISPR details


Home About CRISPRs News FAQs Help Contact Us Examples IGM
Université Paris Sud

Navigation

Home page
CRISPRs database
Browse CRISPRs
BLAST CRISPRs
FlankAlign
CRISPRs utilities
My CRISPRs DB
CRISPRs finder
CRISPRs comparison

Other Tools

CRISPRcompar
CRISPRtionary
CRISPRfinder

GPMS Links

GPMS Team
Tandem Repeats DB
MLVA Web Service


NC_013315_9                                                                                                                 top


Strain : Clostridium difficile CD196 RefSeq :NC_013315 (chromosome circular)
CRISPR id : NC_013315_9
DR consensus (24 bp) : TTGAATGGTAAAAAATATTACTTTNumber of repetitions :3
Begin Position : 726145 End Position : 726291

726145TTACATGACAATATATATTACTTTGGCAATGATTCAAAAGCGGCTACTGGTTGGGCAACT 726204
726205ATTGATGGTAATAGATATTACTTCGAGCCTAATACAGCTATGGGTGCGAATGGTTATAAAACT 726267
726268ATTGATAATAAAAATTTTTACTTT726291
Left flanking sequence : Till position 726145 (length bp)
GTTTAAAGGACCTGATGGATTTGAATACTTTGCACCTGCTAATACGGATGCTAACAACATAGAAGGTCAA
GCTATACGTTATCAAAATAGATTCCTATAT
Right flanking sequence : From position 726291 (length bp)
AGAAATGGTTTACCTCAGATAGGAGTGTTTAAAGGACCTAATGGATTTGAATACTTTGCACCTGCTAATA
CGGATGCTAACAATATAGATGGTCAAGCTA
Print the CRISPR sequence : From position bp To position bp