Institut de Génétique et Microbiologie

CRISPR details


Home About CRISPRs News FAQs Help Contact Us Examples IGM
Université Paris Sud

Navigation

Home page
CRISPRs database
Browse CRISPRs
BLAST CRISPRs
FlankAlign
CRISPRs utilities
My CRISPRs DB
CRISPRs finder
CRISPRs comparison

Other Tools

CRISPRcompar
CRISPRtionary
CRISPRfinder

GPMS Links

GPMS Team
Tandem Repeats DB
MLVA Web Service


NC_013520_2                                                                                                                 top


Strain : Veillonella parvula DSM 2008 RefSeq :NC_013520 (chromosome circular)
CRISPR id : NC_013520_2
DR consensus (35 bp) : GTTTCAATACCGTAAACGGTAAGTGCTGTTGCAACNumber of repetitions :9
Begin Position : 2061823 End Position : 2062450

2061823ATTAATATACTATAAACGTTAATTGTTGTTGCAACCTAATCACTGATACTTGTGGTATGCTTGAAGCTTACTC 2061895
2061896GTTTCAATACCGTAAACGGTAAGTGCTGTTGCAACAGGTGCAGATAGAAAATATCGTCGCCCTTGGAAGTATTAT 2061970
2061971GTTTCAATACCGTAAACGGTAAGTGCTGTTGCAACTCTTCAATTTCAATACTGGAATTGATTTCTACTTCAC 2062042
2062043GTTTCAATACCGTAAACGGTAAGTGCTGTTGCAACTGTAAAATCTTTACAAGATACCACTAAGACAGCGGTAAA 2062116
2062117GTTTCAATACCGTAAACGGTAAGTGCTGTTGCAACCGACAATATTGCAATGGATCAAGTTCGTAACGATGCAAT 2062190
2062191GTTTCAATACCGTAAACGGTAAGTGCTGTTGCAACTGTCAAGAGAGGAGAATAATATGAACAGACAAAAAAAGAAT 2062266
2062267GTTTCAATACCGTAAACGGTAAGTGCTGTTGCAACTGAAGAGCAGTGAAAGTGTACAATCTGTTATGAAAGAAT 2062340
2062341GTTTCAATACCGTAAACGGTAAGTGCTGTTGCAACTTATTCAAAGTAATCGTTCTGTACAATCTATTAGTAATTA 2062415
2062416GTTTCAATACCGTAAACGGTAAGTGCTGTTGCAAC2062450
Left flanking sequence : Till position 2061823 (length bp)
GTTTTAAATCTAGCTATATTATACCATAAACAAAAGAAATAGAACCATTGGCATTAGTGAGATAACTCTA
TCAATATATCAAACTAAAAATAATGGTTCT
Right flanking sequence : From position 2062450 (length bp)
AGCAGGCCTCAGTAGTCCAGTATTCATGGGGCTTAAAAATAGGTTTTGGCAAACCTCACACCGTAAACGG
TCAGATTGAGCTCCCATGGGATTAAAAATG
Print the CRISPR sequence : From position bp To position bp