Institut de Génétique et Microbiologie

CRISPR details


Home About CRISPRs News FAQs Help Contact Us Examples IGM
Université Paris Sud

Navigation

Home page
CRISPRs database
Browse CRISPRs
BLAST CRISPRs
FlankAlign
CRISPRs utilities
My CRISPRs DB
CRISPRs finder
CRISPRs comparison

Other Tools

CRISPRcompar
CRISPRtionary
CRISPRfinder

GPMS Links

GPMS Team
Tandem Repeats DB
MLVA Web Service


NC_013642_1                                                                                                                 top


Strain : Thermotoga naphthophila RKU-10 RefSeq :NC_013642 (chromosome circular)
CRISPR id : NC_013642_1
DR consensus (30 bp) : GTTTCAATAGTTCCTTAGAGGTATGGAAACNumber of repetitions :22
Begin Position : 164700 End Position : 166129

164700GTTTCAATAGTTCCTTAGAGGTATGGAAACTTTGCTGTTGCGATCCACACCAGGATGGCATGCCTTCTG 164768
164769GTTTCAATAGTTCCTTAGAGGTATGGAAACAAATCTCGAAGTCATAAAACTCTTTCCGCCTGCAATA 164835
164836GTTTCAATAGTTCCTTAGAGGTATGGAAACAGGAATTCGTTCGCATCCTCGACAGCATCAAAGACCG 164902
164903GTTTCAATAGTTCCTTAGAGGTATGGAAACACTGTTTTGAGGATATTCTCACTGTGTCTTCCCTTATC 164970
164971GTTTCAATAGTTCCTTAGAGGTATGGAAACGAAGTTCACAGAGCACAATTATTCATGTATGAGGA 165035
165036GTTTCAATAGTTCCTTAGAGGTATGGAAACAGTACAGAGAAAGTTGTTCACATGTGTACAAAAAAG 165101
165102GTTTCAATAGTTCCTTAGAGGTATGGAAACTAAGAAACTGCAACCGCTGTGGGTTGTTGCCTATT 165166
165167GTTTCAATAGTTCCTTAGAGGTATGGAAACAGAGTTCTACTTTCCTACCATCCTTCAAATAAACACT 165233
165234GTTTCAATAGTTCCTTAGAGGTATGGAAACTAGTGAAAAGAAAGAAAACCAGAATCTAGAAGGAGG 165299
165300GTTTCAATAGTTCCTTAGAGGTATGGAAACCTATTTCTGTTCCTTTCAGATTTTCACAAATATAGT 165365
165366GTTTCAATAGTTCCTTAGAGGTATGGAAACTGTGGGAAAGGAGGTGTAAACATGGCAGATATCCCC 165431
165432GTTTCAATAGTTCCTTAGAGGTATGGAAACTGTGGGAAAGGAGGTGTAAACATGGCAGATATCCCC 165497
165498GTTTCAATAGTTCCTTAGAGGTATGGAAACTTAGGTAATTGGGTAGGTAAAACGGTCACTTTTAGTG 165564
165565GTTTCAATAGTTCCTTAGAGGTATGGAAACATACAACAGGAAAGGTGGTGAAACGATGGAGGAAAA 165630
165631GTTTCAATAGTTCCTTAGAGGTATGGAAACACAACCGTATCGAGCTTCTTGAGTCCCCTGCAATCGA 165697
165698GTTTCAATAGTTCCTTAGAGGTATGGAAACGAAGGTTTGATGTAGAAGGTGGTGTGTACTGGAGAAT 165764
165765GTTTCAATAGTTCCTTAGAGGTATGGAAACATGAACTATAAAGTTTTTCCTCGATTTTTGGTTCGCTT 165832
165833GTTTCAATAGTTCCTTAGAGGTATGGAAACAGGTTTCAGTAGAAGATGAAGACATAATAAGGCACA 165898
165899GTTTCAATAGTTCCTTAGAGGTATGGAAACCGTTATAATAGATTGTTACGCTTCTCCATTCCTTCA 165964
165965GTTTCAATAGTTCCTTAGAGGTATGGAAACTATGAGCCTTTTCGTATAATGCCTTTTCAATTGAGCGT 166032
166033GTTTCAATAGTTCCTTAGAGGTATGGAAACACGATTTTTCCGTCGAATGTTTCGAATTTCTTTGCGA 166099
166100GTTTCAATACTTCCTTAGAGGTACGGAAAC166129
Left flanking sequence : Till position 164700 (length bp)
TGTGTGTTAGAATGGTTTATGGAAAGGGAGGATATGGAAGTTCAAAAAACATCTTGCTTTCAGAGTGTGT
TTGTGGTATAATTTCTCTTGAACTCAACGG
Right flanking sequence : From position 166129 (length bp)
TTGTCTTGTATCGATGATCTCCGCTAAGCTCAACAAATTTCAATGCATCCTTTAAACAAAAGTGCCCGTG
AGGGGCGCTTTTTTGTTTCAATGTATGGTA
Print the CRISPR sequence : From position bp To position bp