Institut de Génétique et Microbiologie

CRISPR details


Home About CRISPRs News FAQs Help Contact Us Examples IGM
Université Paris Sud

Navigation

Home page
CRISPRs database
Browse CRISPRs
BLAST CRISPRs
FlankAlign
CRISPRs utilities
My CRISPRs DB
CRISPRs finder
CRISPRs comparison

Other Tools

CRISPRcompar
CRISPRtionary
CRISPRfinder

GPMS Links

GPMS Team
Tandem Repeats DB
MLVA Web Service


NC_013790_23                                                                                                                 top


Strain : Methanobrevibacter ruminantium M1 RefSeq :NC_013790 (chromosome circular)
CRISPR id : NC_013790_23
DR consensus (37 bp) : GTCGCAATCCTTGTTTTAGTAGATTAGCTTTTGCAATNumber of repetitions :12
Begin Position : 1552963 End Position : 1553794

1552963ATAGCAATCATTGTTTTGTTAGAATAATCAATGCAATAAAATTAAACAAAGGAAACAGATTCCAAAGAAGGT 1553034
1553035GTTGTAATCCTTATTTTAGTAGATTAGCTTTTGCAATTTTTTTCCAAATCTTATAAGCAGGAGGCCAGAAAG 1553106
1553107ATCGCAACCCTTATTTTAGTAGATTAGCTTTTGCAATACATATAGATAAATCCTTATGGATAGAGAGGGTAG 1553178
1553179GTCGCAATCCTTATTTTAGTAGATTAGCTTTTGCAATAAACTACTACACAGGTGTTAAAATCGGAGAAATTT 1553250
1553251GTCGCAATCCTTGTTTTAGTAGATTAGCTTTTGCAATACTATAAAGAGTTAAAGGCCAAAGCCTTTAAAGAT 1553322
1553323GTCGCAATCCTTGTTTTAGTAGATTAGCTTTTGCAATTCAATAGGAATGAAATAACAAATGACGCGCAGAAG 1553394
1553395GTCGCAATCCTTGTTTTAGTAGATTAGCTTTTGCAATATAAGGGTATGTTAAAAACCCTAAAAAACTATAAAC 1553467
1553468GTCGCAATCCTTGTTTTAGTAGATTAGCTTTTGCAATTATGAAATATAAAGAGTTCTCAGATAAATGGGAGAA 1553540
1553541GTCGCAATCCTTGTTTTAGTAGATTAGCTTTTGCAATAGAACGGAGGAATTTCTTATGACTAATGAAAAATCT 1553613
1553614GTCGCAATCCTTGTTTTAGTAGATTAGCTTTTGCAATACATTGCTAGACACATAGGAATGGTGGAATATGAT 1553685
1553686GTCGCAATCCTTGTTTTAGTAGATTAGCTTTTGCAATCGACTACGAAGCAACTATTAGCAGAATGACCAAAT 1553757
1553758GTCGCAATCCTTGTTTTAGTAGATTAGCTTTTGCAAT1553794
Left flanking sequence : Till position 1552963 (length bp)
ATAAAATATTTACAGACACATACAAATCTTTTAGAAAGGGTTTCTACAAAGGCTGAAGAATCATTGCAAT
TTTATTTATAAGAAAACTGAAGGGATAAAC
Right flanking sequence : From position 1553794 (length bp)
AGTCCAAAAATTTCCTCTAAACATATCAAAAACATATGGATATTGCTTCTTTTTATAGGGTTTTTGTGCA
AATCTAAAAACTTAACCCTTATTTATATAT
Print the CRISPR sequence : From position bp To position bp