Institut de Génétique et Microbiologie

CRISPR details


Home About CRISPRs News FAQs Help Contact Us Examples IGM
Université Paris Sud

Navigation

Home page
CRISPRs database
Browse CRISPRs
BLAST CRISPRs
FlankAlign
CRISPRs utilities
My CRISPRs DB
CRISPRs finder
CRISPRs comparison

Other Tools

CRISPRcompar
CRISPRtionary
CRISPRfinder

GPMS Links

GPMS Team
Tandem Repeats DB
MLVA Web Service


NC_014471_3                                                                                                                 top


Strain : Ignisphaera aggregans DSM 17230 RefSeq :NC_014471 (chromosome circular)
CRISPR id : NC_014471_3
DR consensus (24 bp) : CTTTCAATTCCATATATTGGATTCNumber of repetitions :20
Begin Position : 562711 End Position : 564040

562711CTTTCAATTCCATTTATAGGATTTCACTCAATATAGGCTGTGGATGGAATACTCTTGACTATAGCTTC 562778
562779CTTTCAATTCCATATATTGGATTCCCAGAAATAACTCAGGAGCAGTTACCAAGTTATTTACAAGATGCAATTTCA 562853
562854CTTTCAATTCCATATATTGGATTCTTAAAGCACATCAGTTTATAGAAGCATTCTTTGAGGAATTGGAG 562921
562922CTTTCAATTCCATATATTGGATTCATGCACTATTGATCCTATAGATGATGGTATAATTCCCACAGCTGT 562990
562991CTTTCAATTCCATATATTGGATTCGGTCTAAGAAAGATATTGTAGAGGAAGCTGTTAGGTTGTATGTACT 563060
563061CTTTCAATTCCATATATTGGATTCTTCCAGCCTAAGACCTGAGTATACTAGTAACTTGTATACAGTACT 563129
563130CTTTCAATTCCATATATTGGATTCAGGACACTCTAACAGTTTCAGGTCTGCCTGAGGCAGAATCAATTTCG 563200
563201CTTTCAATTCCATATATTGGATTCTTTCATTGTTGATACAGCGACATTGGCATCGTTACAAAGTTGTTCCA 563271
563272CTTTCAATTCCATATATTGGATTCATACTTTGATAGGCAATGTGTAAAGTTTGTGTTGAAGGTGATTAAA 563341
563342CTTTCAATTCCATATATTGGATTCGCGAGAGAGCCCAAGATAGTCGTAAGCGATACGGCAGCTGATG 563408
563409CTTTCAATTCCATATATTGGATTCAGACCCTTAGACCTCTCAGAGAATACCCTGTACAGCACATA 563473
563474CTTTCAATTCCATATATTGGATTCAATCAACTAAACTAATAATCAGAATCAAGTATGGTGAACATGAT 563541
563542CTTTCAATTCCATATATTGGATTCTCCAGATCAGAGGCGTGGATTGAGGAGTATAGGAAGTATATG 563607
563608CTTTCAATTCCATATATTGGATTCGCCCAACATAGTCATGAAATGGGACTTCGAGGACGGTACACCTCA 563676
563677CTTTCAATTCCATATATTGGATTCATGCTAGATTGAATAAATTCGAAGATGGGTGGGTCATTAAGG 563742
563743CTTTCAATTCCATATATTGGATTCCTACTTTATGATAGTCCTCAGCAAGAGACAGTTGCAAGATCTTA 563810
563811CTTTCAATTCCATATATTGGATTCCCGAAGAATTGCCGGAGCTCTATCCGCCTAGGAAACAAACCGAG 563878
563879CTTTCAATTCCATATATTGGATTCATCTTCGCATTAGCAGATAATATCACTACATGGTTAGCAATATCCGT 563949
563950CTTTCAATTCCATATATTGGATTCTTCGTGTGGCTGAAGAAATACCTAGGAAGTAAAGACTTGGAA 564015
564016CTTTCAATTCCATATATTGGATTC564039
Left flanking sequence : Till position 562711 (length bp)
CCCCATTTAATAAGATCCAGAAACGCAATTCACATACATAACAGTCAATATTCTTCCATCTAACACCAAT
ACATCTATACCCTCTCTCAAACAAAATCAC
Right flanking sequence : From position 564040 (length bp)
GGGTCACGATTCCTCTATTCTTATCTTATTGTAGTCTCCATATATGGATTCAGAGTCTTATGTATAAATA
CTTGATAAAGATTTAAAAATCTTTTTGCAG
Print the CRISPR sequence : From position bp To position bp