Institut de Génétique et Microbiologie

CRISPR details


Home About CRISPRs News FAQs Help Contact Us Examples IGM
Université Paris Sud

Navigation

Home page
CRISPRs database
Browse CRISPRs
BLAST CRISPRs
FlankAlign
CRISPRs utilities
My CRISPRs DB
CRISPRs finder
CRISPRs comparison

Other Tools

CRISPRcompar
CRISPRtionary
CRISPRfinder

GPMS Links

GPMS Team
Tandem Repeats DB
MLVA Web Service


NC_015185_1                                                                                                                 top


Strain : Desulfurobacterium thermolithotrophum DSM 11699 RefSeq :NC_015185 (chromosome circular)
CRISPR id : NC_015185_1
DR consensus (29 bp) : GTTTTATCTGAACGTAGTGGGATATAAAGNumber of repetitions :6
Begin Position : 267992 End Position : 268349

267992GTTTTATCTGAACGTAGTGGGATATAAAGTGTATTCCTACTACCTAAGACCACAAAACATTCAGC 268056
268057GTTTTATCTGAACGTAGTGGGATATAAAGTATCGTTAATGCTGGTGTTGGCGTTGGAACTAAAGAA 268122
268123GTTTTATCTGAACGTAGTGGGATATAAAGCGCATTTTTAAAACAAGCTCAATTGCTCTTGTATTAC 268188
268189GTTTTATCTGAACGTAGTGGGATATAAAGTACTTGAAAAGAGCAGCATTAGTTGTATCTGTTGCT 268253
268254GTTTTATCTGAACGTAGTGGGATATAAAGTCCTCGCAGGTAAAGAGCGTATCTCTTCGGATTCTTGT 268320
268321GTTTTATCTGAACGTAGTGGGATATAAAG268349
Left flanking sequence : Till position 267992 (length bp)
TTCAAACACCCTCTTTGCTACAATTAATTACTTTTTCACGATTTGATATAGTTCAAAAATAAGTTGTGGT
TCTTTGACTTAAAAGAATATGGATTTCTTG
Right flanking sequence : From position 268349 (length bp)
TTAAATGTTTGTGATTTAATTAATAGATTCGATCCAATATAAGAAACAAACGAAAATAACGTAGATTCTT
ATTTTAAATTGGTTGTTATGAAAAAAGTAA
Print the CRISPR sequence : From position bp To position bp