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CRISPRs details
NC_015966_4
Flanking alignement tool
Page manual
  
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NC_015966_4                                                                                                                 
top
Strain :
Rhodothermus marinus SG0.5JP17-172
RefSeq :
NC_015966 (chromosome circular)
CRISPR id :
NC_015966_4
DR consensus (30 bp) :
GTTTTAATCGCACCTTTTTGGTATTGAAAT
Number of repetitions :
55
Begin Position :
1339694
End Position :
1343322
1339694
GTTTTAATCGCACCTTTTTGGTATTGAAAT
TGAAGCACGCAAAACTCCTTCTGTTGCTGGCCGCC
1339758
1339759
GTTTTAATCGCACCTTTTTGGTATTGAAAT
TTGACAATGCCGATGTGGGCGCGCTGGCCTACATCAG
1339825
1339826
GTTTTAATCGCACCTTTTTGGTATTGAAAT
GCAGGAACACCATGCTGCGGAGTGAGCGGATATTGG
1339891
1339892
GTTTTAATCGCACCTTTTTGGTATTGAAAT
ACAGGAAGGCAAGCTGACTGTCGCGATCCTGCAGGCCT
1339959
1339960
GTTTTAATCGCACCTTTTTGGTATTGAAAT
GGAGCACAGTTTTGTGCAAGCACCCGGCATATACTTC
1340026
1340027
GTTTTAATCGCACCTTTTTGGTATTGAAAT
GGCGTACCGCTGTCGCCGATCCTGTTGCGTGAGCGCATC
1340095
1340096
GTTTTAATCGCACCTTTTTGGTATTGAAAT
TGTACGACAAACGGAACTTGGCCCTCACGGCGAGCG
1340161
1340162
GTTTTAATCGCACCTTTTTGGTATTGAAAT
GACGGCGGCAAAGAAAGAATGACATTGCCGCCCTCAT
1340228
1340229
GTTTTAATCGCACCTTTTTGGTATTGAAAT
GGGTAGAGGCGCTCGTCCTCGTCCAGGACATAGACG
1340294
1340295
GTTTTAATCGCACCTTTTTGGTATTGAAAT
GTACAGATATTTCAGAGTCCACGATCCACAGATAAT
1340360
1340361
GTTTTAATCGCACCTTTTTGGTATTGAAAT
ATTGAAGAGCATCGGCGAGATGCCGTACGTGTCGGC
1340426
1340427
GTTTTAATCGCACCTTTTTGGTATTGAAAT
GCACGTAAGAGGCATGAGAAAAGGAAGTATAACCTTCAGGCCA
1340499
1340500
GTTTTAATCGCACCTTTTTGGTATTGAAAT
CGTGTATGCCTACGAGGAGCTGAACTCGTACTGGCAG
1340566
1340567
GTTTTAATCGCACCTTTTTGGTATTGAAAT
CTCCGAAAGAAGTTACTTCCTCAGTACAAAGAGCA
1340631
1340632
GTTTTAATCGCACCTTTTTGGTATTGAAAT
CTGGCCCTCGATCTGTACGCTTGGCTTTCGTATCGGG
1340698
1340699
GTTTTAATCGCACCTTTTTGGTATTGAAAT
AATAGCTGGTACGGGGAACTGAACTTGGCGAGGATGC
1340765
1340766
GTTTTAATCGCACCTTTTTGGTATTGAAAT
TACAGCTCCGACTGCAGCACGGCCGACAACCGCGCCCG
1340833
1340834
GTTTTAATCGCACCTTTTTGGTATTGAAAT
CTTGGAAAAAGTCTCGGTGGGTGATCGGCGCGTAA
1340898
1340899
GTTTTAATCGCACCTTTTTGGTATTGAAAT
CCTGAAAGCGCAAGGCCAGCTTCGCTACTGGCGCAACA
1340966
1340967
GTTTTAATCGCACCTTTTTGGTATTGAAAT
TTGCATAACCTAAAAAATGAACGCTATCCTTTAGC
1341031
1341032
GTTTTAATCGCACCTTTTTGGTATTGAAAT
GGAAATACTGTTTGTTCAACTTTCTGGCAAATTGCTC
1341098
1341099
GTTTTAATCGCACCTTTTTGGTATTGAAAT
GCGGTAATTACATCTGGATCGATAATGGCTTTTAC
1341163
1341164
GTTTTAATCGCACCTTTTTGGTATTGAAAT
TATATTTCAACAACCACCCCTCTTTCTGAAGGGAATCCA
1341232
1341233
GTTTTAATCGCACCTTTTTGGTATTGAAAT
GATAGGGTGGCAACACCTCGCGGTAATCCTGCGGG
1341297
1341298
GTTTTAATCGCACCTTTTTGGTATTGAAAT
GTTGCCCGAGCCGGGCTGTTTCTTTTCACTCGTTGTG
1341364
1341365
GTTTTAATCGCACCTTTTTGGTATTGAAAT
GCGCGTAATGCCGGGCTGGGTGTACATGTCTCCCGA
1341430
1341431
GTTTTAATCGCACCTTTTTGGTATTGAAAT
TTCGCCTTCCGTATGCCGCACCAGACAACGGCTTGCG
1341497
1341498
GTTTTAATCGCACCTTTTTGGTATTGAAAT
TGCAGCGCCTCTACGGCTGGTCGTGGCGCAAAGCGCG
1341564
1341565
GTTTTAATCGCACCTTTTTGGTATTGAAAT
ACGTCGCCGCCATCCTGGCCGCCTACCGGACGATCAA
1341631
1341632
GTTTTAATCGCACCTTTTTGGTATTGAAAT
GGCGAAAACTATCGTCATCTGGGGTGGCGCTTCCCGC
1341698
1341699
GTTTTAATCGCACCTTTTTGGTATTGAAAT
TTACGTTCAACGTCACGCGAAAATCCACGGTCTTCCA
1341765
1341766
GTTTTAATCGCACCTTTTTGGTATTGAAAT
AATCATGGCGTTGGATTACGCGCAGCGCGTCGTCGC
1341831
1341832
GTTTTAATCGCACCTTTTTGGTATTGAAAT
CTGGACCGAGACGCCGACCGACCAGCGATTGAAGGCCG
1341899
1341900
GTTTTAATCGCACCTTTTTGGTATTGAAAT
GTGACGGGCGCCATCGAATGGCTTGCCCAGGATGGCGT
1341967
1341968
GTTTTAATCGCACCTTTTTGGTATTGAAAT
ACCGCCCGCGCGTGGCGATCAGGTGCTCGGCCTCC
1342032
1342033
GTTTTAATCGCACCTTTTTGGTATTGAAAT
CGAAAAATACGATAGCTTTCATGATGCCCTCCTTCGG
1342099
1342100
GTTTTAATCGCACCTTTTTGGTATTGAAAT
ATTGGATTTTGTCGGCCAGCGGTCCTTCGGTAGA
1342163
1342164
GTTTTAATCGCACCTTTTTGGTATTGAAAT
GCCAAAGCCCAAGGTCGACTGTCTAAAATCGCAGAG
1342229
1342230
GTTTTAATCGCACCTTTTTGGTATTGAAAT
GGCAGAGACGATGAAAAAGGCCGTGGACTACGAGTTCA
1342297
1342298
GTTTTAATCGCACCTTTTTGGTATTGAAAT
GAAGTGACCGAGAGCCGGATCGTCACCACTCTCAA
1342362
1342363
GTTTTAATCGCACCTTTTTGGTATTGAAAT
ATCTTCGATCTTATCGACGAGACGGCGCCGGTGAACTG
1342430
1342431
GTTTTAATCGCACCTTTTTGGTATTGAAAT
CTCTGCGGCTGGTAGGGGACAGGCAGCGCCACACGCT
1342497
1342498
GTTTTAATCGCACCTTTTTGGTATTGAAAT
ATCTGAAAAGCACGGGCAATCTGCTGGTCGACGTA
1342562
1342563
GTTTTAATCGCACCTTTTTGGTATTGAAAT
TCGGAACGCGGGCGTAATCGACCACCTCAGCCCCGACC
1342630
1342631
GTTTTAATCGCACCTTTTTGGTATTGAAAT
CGAAGCGGTAGCCGCGCCCGCTGGCGATCACCTCGG
1342696
1342697
GTTTTAATCGCACCTTTTTGGTATTGAAAT
TATGTTGGCCTCCGACTGGCCCACGAGCGACCCTT
1342761
1342762
GTTTTAATCGCACCTTTTTGGTATTGAAAT
AGGTCGCGAACAAGCTCTTGCGCAATGATGGTCGC
1342826
1342827
GTTTTAATCGCACCTTTTTGGTATTGAAAT
AGCTGCTTTGCAGCAGCTAGGACGATGGACGACACAA
1342893
1342894
GTTTTAATCGCACCTTTTTGGTATTGAAAT
ATCAGGTGGAGGATTCGATCGAGGGGTGGTGCTCGG
1342959
1342960
GTTTTAATCGCACCTTTTTGGTATTGAAAT
TGATCGATGCGACGCGCAAGGGCCACCCGCTGCACA
1343025
1343026
GTTTTAATCGCACCTTTTAGGTATTGAAAT
GCAGGGACGCGCGGCGCTCAAGTACCAGCGAAGGCCG
1343092
1343093
GTTTTAATCGCACCTTTTAGGTATTGAAAT
ACGACTTGGCACGCCTGCGGGGCGCCAGGCTGGTAACG
1343160
1343161
GTTTTAATCGCACCTTTTAGGTATTGAAAT
GGGGTTGATTATGATATTGAAAGAAATGACGATTCC
1343226
1343227
GTTTTAATCGCACCTTTTAGGTATTGAAAT
GATCCTGCAGGTGTCCAGCGTAGCAGGTTCCGTACT
1343292
1343293
GTTTTAATCGCACCTTTTAGGTATTGAAAT
1343322
Left flanking sequence : Till position 1339694 (length
bp)
TCAGGGGTAACCGGAGGTCGACGACTCCGGGGACTTGACATTCCGGATCAAATCGCTTATAATACCCTCC
AGAAGCCGGTTCTGCTCTTTGAAAGGCCGG
Right flanking sequence : From position 1343322 (length
bp)
AAAGCCACGGATTGGCTAATCTTGAAAAAGTTGGAGCGATAGGGGCGAAGGGGTTACAATAGGGCCCCAA
TGGTGTCTTTTAAATAAAGCGACCGCTGCT
Print the CRISPR sequence : From position
bp To position
bp