Institut de Génétique et Microbiologie

CRISPR details


Home About CRISPRs News FAQs Help Contact Us Examples IGM
Université Paris Sud

Navigation

Home page
CRISPRs database
Browse CRISPRs
BLAST CRISPRs
FlankAlign
CRISPRs utilities
My CRISPRs DB
CRISPRs finder
CRISPRs comparison

Other Tools

CRISPRcompar
CRISPRtionary
CRISPRfinder

GPMS Links

GPMS Team
Tandem Repeats DB
MLVA Web Service


NC_016818_1                                                                                                                 top


Strain : Rahnella aquatilis CIP 78.65 = ATCC 33071 RefSeq :NC_016818 (chromosome circular)
CRISPR id : NC_016818_1
DR consensus (28 bp) : GTTCACTGCCGTACAGGCAGCTTAGAAANumber of repetitions :18
Begin Position : 1956004 End Position : 1957051

1956004GTTCACTGCCGTACAGGCAGCTTAGAAAAGCACGATGGGGCTGCTAACAAATCCGGTTGC 1956063
1956064GTTCACTGCCGTACAGGCAGCTTAGAAAGAGAGCGCGGTTGCGCCCTGGTCAGGCTTGCC 1956123
1956124GTTCACTGCCGTACAGGCAGCTTAGAAATGAATGGGTGAAAGAACCAGAATCAGCAGAAG 1956183
1956184GTTCACTGCCGTACAGGCAGCTTAGAAAGCACAGGTTGGCATCGCGCAGGTTGGCACCGC 1956243
1956244GTTCACTGCCGTACAGGCAGCTTAGAAAGCCGCAAACTATCCACTTGTCATTAATCCATT 1956303
1956304GTTCACTGCCGTACAGGCAGTTTAGAAAATCATGCAGGAAGATCAGGGCCAGTTGTTCAC 1956363
1956364GTTCACTGCCGTACAGGCAGCTTAGAAAGCAGAAAATTCAGCAGTTTGTCCGCTGCCTTT 1956423
1956424GTTCACTGCCGTACAGGCAGCTTAGAAAAGAGCGTGAATTTGCTCGGCGGTGAGTTTTGA 1956483
1956484GTTCACTGCCGTACAGGCAGCTTAGAAAAACACATTCAGCGCTCGCAAAGGCTCATTGCG 1956543
1956544GTTCACTGCCGTACAGGCAGCTTAGAAATTAGAGCAGAAAGCGTAGAGCCCTCAACGCTG 1956603
1956604GTTCACTGCCGTACAGGCAGCTTAGAAAGGCAGGATGATGCAACAAAGGCTGCATTTTCC 1956663
1956664GTTCACTGCCGTACAGGCAGCTTAGAAATCGGCTGGTAACCTTGGGGGTTTAGTCGGAAT 1956723
1956724GTTCACTGCCGTACAGGCAGCTTAGAAATTTGTGCGGATTGAAGCAGCAGAACGCCGGAA 1956783
1956784GTTCACTGCCGTACAGGCAGCTTAGAAACACGGAAGCCGATCTGTATCCCGAAGAAATCA 1956843
1956844GTTCACTGCCGTACAGGCAGCTTAGAAAGGATGAACGGAGCGGCGCTGTGCGCGTGTTTC 1956903
1956904GTTCACTGCCGTACAGGCAGCTTAGAAATTGCCATGGCTCGATAGCTGTCAGCATAAGCC 1956963
1956964GTTCACTGCCGTACAGGCAGCTTAGAAATCTTATTTTACTCGTTTAAATGCATAGGTTCC 1957023
1957024GTTCACTGCCGTACAGGCAGCTTAGAAA1957051
Left flanking sequence : Till position 1956004 (length bp)
TGATTTTCATTAACCAATAATACCCTCAAAAAAAGAGGGATTTTCTGCCCAAACAGCGATAATCTTTTAC
AGTTCAAAGCATAAAGCTGAAAATGCAACG
Right flanking sequence : From position 1957051 (length bp)
ACATACCGCATCGGTATGCGTTCGACGTTCTGGCCAGGCAGATGACTGCCGCCCGTAAAAGCACGCTTTA
CCCGGTAAACTCATCCTTATGAGAGAAAAG
Print the CRISPR sequence : From position bp To position bp