Institut de Génétique et Microbiologie

CRISPR details


Home About CRISPRs News FAQs Help Contact Us Examples IGM
Université Paris Sud

Navigation

Home page
CRISPRs database
Browse CRISPRs
BLAST CRISPRs
FlankAlign
CRISPRs utilities
My CRISPRs DB
CRISPRs finder
CRISPRs comparison

Other Tools

CRISPRcompar
CRISPRtionary
CRISPRfinder

GPMS Links

GPMS Team
Tandem Repeats DB
MLVA Web Service


NC_017173_7                                                                                                                 top


Strain : Clostridium difficile CF5 RefSeq :NC_017173 (chromosome circular)
CRISPR id : NC_017173_7
DR consensus (29 bp) : GTTTTAGATTAACTATATGGAATGTAAATNumber of repetitions :8
Begin Position : 1741664 End Position : 1742176

1741664GTTTTAGATTAACTATATGGAATGTAAATCACAAAAAATATTGTTTCGGTGATAAGGTTGACCA 1741727
1741728GTTTTAGATTAACTATATGGAATGTAAATGCTTCAATTTCTTTAGCTCAAATAATACTAGATTCTTTAGCTCAAATAATACTAGAAAGTG 1741817
1741818GTTTTAGATTAACTATATGGAATGTAAATACATTTAAACCTGTTGCAAAAGCATTATCTGAATATG 1741883
1741884GTTTTAGATTAACTATATGGAATGTAAATTAATTTAATATTCTCTGGATTTGGTTCTCCATTTATGC 1741950
1741951GTTTTAGATTAACTATATGGAATGTAAATAGAACTTTTTTATATCAGAAGTACTTGACATGATTG 1742015
1742016GTTTTAGATTAACTATATGGAATGTAAATATAGATAGTTTTTGTTCTATCTTAACTCTTAGAGGA 1742080
1742081GTTTTAGATTAACTATATGGAATGTAAATGCTTTTGGGGAAAAACTAGGTGTCAGTAAAGATGTTA 1742146
1742147GTTTTAGATTAACTATATGGACTTAAAAT1742175
Left flanking sequence : Till position 1741664 (length bp)
GGTGTGTGATAAGTGTTATCAATTGCACTATTGCCCGCTCACTGCAATTTTAAGAGTATTGTATATATGT
AGGTATTGGAAATGCTAAGTTTATTTTGGG
Right flanking sequence : From position 1742176 (length bp)
AAAAATACTGAAAAACACTTACTTTTATGGTAGGTGCTTTTTTATATTAAAATCTGTGTACTTAATTGAA
ATATTTGGTAAAATATGTAAGAATTGTATG
Print the CRISPR sequence : From position bp To position bp