Institut de Génétique et Microbiologie

CRISPR details


Home About CRISPRs News FAQs Help Contact Us Examples IGM
Université Paris Sud

Navigation

Home page
CRISPRs database
Browse CRISPRs
BLAST CRISPRs
FlankAlign
CRISPRs utilities
My CRISPRs DB
CRISPRs finder
CRISPRs comparison

Other Tools

CRISPRcompar
CRISPRtionary
CRISPRfinder

GPMS Links

GPMS Team
Tandem Repeats DB
MLVA Web Service


NC_017179_5                                                                                                                 top


Strain : Clostridium difficile BI1 RefSeq :NC_017179 (chromosome circular)
CRISPR id : NC_017179_5
DR consensus (24 bp) : TTGAATGGTAAAAAATATTACTTTNumber of repetitions :5
Begin Position : 734218 End Position : 734491

734218TTGAATGGTAAAAAATATTACTTTGATAATAACTCAAAAGCAGTTACCGGATGGCAAACT 734277
734278ATTGATAGTAAAAAATATTACTTTAATACTAACACTGCTGAAGCAGCTACTGGATGGCAAACT 734340
734341ATTGATGGTAAAAAGTATTACTTTAATACTAACACTGCTGAAGCAGCTACTGGATGGCAAACT 734403
734404ATTGATGGTAAAAAATATTACTTTAATACTAACACTTCTATAGCTTCAACTGGTTATACAATT 734466
734467ATTAATGGTAAATATTTTTATTTT734490
Left flanking sequence : Till position 734218 (length bp)
GTTTAGTGGCTCTAATGGATTTGAATATTTCGCACCTGCTAATACTTATAATAATAACATAGAAGGTCAG
GCTATAGTTTATCAAAGTAAATTCTTAACT
Right flanking sequence : From position 734491 (length bp)
ATACTGATGGTATTATGCAGATAGGAGTGTTTAAAGTACCTAATGGATTTGAATACTTTGCACCTGCTAA
TACTCATAATAATAACATAGAAGGTCAAGC
Print the CRISPR sequence : From position bp To position bp