Institut de Génétique et Microbiologie

CRISPR details


Home About CRISPRs News FAQs Help Contact Us Examples IGM
Université Paris Sud

Navigation

Home page
CRISPRs database
Browse CRISPRs
BLAST CRISPRs
FlankAlign
CRISPRs utilities
My CRISPRs DB
CRISPRs finder
CRISPRs comparison

Other Tools

CRISPRcompar
CRISPRtionary
CRISPRfinder

GPMS Links

GPMS Team
Tandem Repeats DB
MLVA Web Service


NC_017992_6                                                                                                                 top


Strain : Thermoanaerobacterium saccharolyticum JW/SL-YS485 RefSeq :NC_017992 (chromosome circular)
CRISPR id : NC_017992_6
DR consensus (30 bp) : GTTTTTAGCCTACCTATGAGGAATTGAAACNumber of repetitions :17
Begin Position : 914626 End Position : 915727

914626GTTTTTAGCCTACCTATGAGGAATTGAAACATTGATATAACTTGCATTCATTGGTGTTAATTTTGT 914691
914692GTTTTTAGCCTACCTATGAGGAATTGAAACATAAGCAGATTTTTATAAGGGGGTGTGTTTTTATTG 914757
914758GTTTTTAGCCTATCTATGAGGAATTGAAACTTAATACCTATAATCAAGTAAAGTATATAAACGCTC 914823
914824GTTTTTAGCCTACCTATGAGGAATTGAAACGCTATTGCGCTTAAGTCTGATTTTTTGATGTCTTTTGAA 914892
914893GTTTTTAGCCTACCTATGAGGAATTGAAACTTTCACTTACTTTTCTAACATCTTCTAATGAAAATTCA 914960
914961ATTTTTAGCCTACCTATTAGGGATTGAAACTATAGATGTAGCTGGTGATATTGTTACAGGAGTATTGCTA 915030
915031GTTTTTAGCCTACCTATAAGGGATTGAAACTAATTTGACAATTCCTCAATAGCACGTTGTACTTCT 915096
915097GTTTTTAGCCTACCTATAAGGGATTGAAACTAGTTTGCCCAGAACTAACAGCATAACCAAAACCT 915161
915162GTTTTTAGCCTACCTATAAGGGATTGAAACTGCTTTTGTAAGAATTAAGCACACTGTTGTCATACG 915227
915228GTTTTTAGCCTACCTATGAGGAATTGAAACTCACAGCGGACATAATATTCTTCAAGACAGTCCGGA 915293
915294ATTTTTAGTCTACCTATGAGGGATTGAAACGGTGAAAAGCCCAGTTTATCCGCTTCGATGTATAACTT 915361
915362GTTTTTAGCCTACCTATAAGGGATTGAAACGGATTTTCCCATTTGTTTCCGATGATTTTGACATAT 915427
915428GTTTTTAGCCTACCTATGAGGAATTGAAACATGTATGTTGTAATAGCAGTTGCTTATCAGGTAGATAA 915495
915496ATTTTTAGCCTACCTATGAGGAATTGAAACTCGCAAAAATCTATATCATCAGGATGCCAATCAGCG 915561
915562GTTTTTAGTCTACCTATGAGGAATTGAAACTTGTTTATCTCTCCTTTAAAAATTATCTTAGTTTTTTTC 915630
915631GTTTTTAGTCTACCTATAAGGGATTGAAATATTTTTTTATTTTTGACAGATAATCGCTGTATGCTTT 915697
915698GTTTTTAGCCTACCTATGAGGAATTAAATA915727
Left flanking sequence : Till position 914626 (length bp)
TATCAGAAAGAGCAAGGCTTGTGGAATCATCAAGTATGAGAGCTTAACATTAACTGGTTTTTTGCAAAAA
GAGAATGGCTTCATAAGAGGAAGTGAATTA
Right flanking sequence : From position 915727 (length bp)
AAAACCTTAGCGAACATTCTTTACCTTCTATGGATAAAAAGTTCATCAATTAAAATTTTTTAAAGTGGGT
GTAAAGTGTTATGACAACATATTATGATGA
Print the CRISPR sequence : From position bp To position bp