Institut de Génétique et Microbiologie

CRISPR details


Home About CRISPRs News FAQs Help Contact Us Examples IGM
Université Paris Sud

Navigation

Home page
CRISPRs database
Browse CRISPRs
BLAST CRISPRs
FlankAlign
CRISPRs utilities
My CRISPRs DB
CRISPRs finder
CRISPRs comparison

Other Tools

CRISPRcompar
CRISPRtionary
CRISPRfinder

GPMS Links

GPMS Team
Tandem Repeats DB
MLVA Web Service


NC_022521_3                                                                                                                 top


Strain : Aeropyrum camini SY1 = JCM 12091 RefSeq :NC_022521 (chromosome circular)
CRISPR id : NC_022521_3
DR consensus (24 bp) : GAATCTTCGAGATAGAATTGCAAGNumber of repetitions :16
Begin Position : 679471 End Position : 680511

679471GAATCTTCGAGATAGAATTGCAAGGAGCCGGGGGCGGTGAAATATGCGGCGTGTAGCTTGGCC 679533
679534GAATCTTCGAGATAGAATTGCAAGTCGATATAACACTCGATCTAGCCGCCGTCGAACCAACAGCC 679598
679599GAATCTTCGAGATAGAATTGCAAGTTATCAGCGGCGGAGGGCGCGGCGGATGCTATAACAGATATGCTAG 679668
679669GAATCTTCGAGATAGAATTGCAAGAAGCACACTTTGAGCTCGCTCGCGAGCGGCGAAAAGTCTGTCAA 679736
679737GAATCTTCGAGATAGAATTGCAAGCTACTTTGAGCAAATCTACAAGAGGTTGAGGGCATGGATTAGCTTCGG 679808
679809GAATCTTCGAGATAGAATTGCAAGATCAAGATTATACTAGCTGGAGTGGAGGGTGAGCATGCAGAGTTCC 679878
679879GAATCTTCGAGATAGAATTGCAAGTGTTTCATGGGGTAAACGTAAATTTGCTAAACACACTATGCTAT 679946
679947GAATCTTCGAGATAGAATTGCAAGTGTAGAGCTCAGAGAGAGGCTTCTCACCATCCTCGACAGCCTTCCTAAC 680019
680020GAATCTTCGAGATAGAATTGCAAGTTTATTATATTAAATACTGTAGTTAGATCTAGCATGTTACC 680084
680085GAATCTTCGAGATAGAATTGCAAGACACTGTTAAAGAGGAAATGAAAGTCGGGGAGTTATCGAACTACAT 680154
680155GAATCTTCGAGATAGAATTGCAAGCATGGCCTGGGCTTGACGCCTGAACCTGGCTGTCCAGCTA 680218
680219GAATCTTCGAGATAGAATTGCAAGGGCTAGCCCAGCGCCTGGAAGCACCCTTCATAAACAAGTGCAG 680285
680286GAATCTTCGAGATAGAATTGCAAGATGCGGCTGACAGCTTCCACGTACTTTAGTGCTACTGTATCTGT 680353
680354GAATCTTCGAGATAGAATTGCAAGGTCGTTAAAGTAGCCATTGGTTGGGTCTAGTGCCTGTGCTATCC 680421
680422GAATCTTCGAGATAGAATTGCAAGACTGTATATCCGCTGAATCTTTGCTCCACACCTGGGGCAGGG 680487
680488GAATCTTCGAGATAGAATTGCAAG680511
Left flanking sequence : Till position 679471 (length bp)
TAGAGTTGACTAGCCTCCCGCCCCCCGGGATGGCAGGGTGGAAAATAGAATATAGTATCGACTGTAGACA
CTACAACGCACACCAACAAAACCATGTGCA
Right flanking sequence : From position 680511 (length bp)
CTGTGCTGTGTGTTTCGGTTGTGTGGCATATTTTTATAGCCTCGGCTTGGGCATGTTGTGAGGTGGGGAT
GGCTAGGCTTGGTTAGGGGTGGCATTAGGG
Print the CRISPR sequence : From position bp To position bp