Institut de Génétique et Microbiologie

CRISPR details


Home About CRISPRs News FAQs Help Contact Us Examples IGM
Université Paris Sud

Navigation

Home page
CRISPRs database
Browse CRISPRs
BLAST CRISPRs
FlankAlign
CRISPRs utilities
My CRISPRs DB
CRISPRs finder
CRISPRs comparison

Other Tools

CRISPRcompar
CRISPRtionary
CRISPRfinder

GPMS Links

GPMS Team
Tandem Repeats DB
MLVA Web Service


NZ_CP009501_11                                                                                                                 top


Strain : Methanosarcina thermophila TM-1 GCF_000969885 RefSeq :NZ_CP009501 (chromosome circular)
CRISPR id : NZ_CP009501_11
DR consensus (37 bp) : ATTCGAGAGCAAGATCCATTAAAACAAGGATTGAAACNumber of repetitions :55
Begin Position : 3029861 End Position : 3033895

3029861ATTCGAGAGCAAGATCCATTAAAACAAGGATTGAAACTGGGGTTGCCACTTGCTGGACCTGCTCCCTGCGCGAGAA3029936
3029937ATTCGAGAGCAAGATCCATTAAAACAAGGATTGAAACCCTGGTCCTCTTCCTGGCTCCCACCCACGCTTGTGTTT3030011
3030012ATTCGAGAGCAAGATCCATTAAAACAAGGATTGAAACGATAGTGAGCTTGTAAACGATCTCCACGAACTTGAA3030084
3030085ATTCGAGAGCAAGATCCATTAAAACAAGGATTGAAACTGGATTGAAAGCCCGGAAGCCGCTTGAGTATAAGTATT3030159
3030160ATTCGAGAGCAAGATCCATTAAAACAAGGATTGAAACCATCGTACCAGAGTTTGGCCGCCATCAATTCCCTTGC3030233
3030234ATTCGAGAGCAAGATCCATTAAAACAAGGATTGAAACAATCTCTGCCGTCTGCTGTCATGCCTGGACGGTATG3030306
3030307ATTCGAGAGCAAGATCCATTAAAACAAGGATTGAAACCTCAAACCTTACTAATCTAACACATGAAATCGTAACA3030380
3030381ATTCGAGAGCAAGATCCATTAAAACAAGGATTGAAACTTGTTATAGCTGTCTGCATAGACTCAGGCATATTT3030452
3030453ATTCGAGAGCAAGATCCATTAAAACAAGGATTGAAACTGATTCAAGTGTTTCACGGCTTTCTGTCCTCCGAA3030524
3030525ATTCGAGAGCAAGATCCATTAAAACAAGGATTGAAACATCGCAGCAGCCGACGGGATGGTCTCAAAGGCAGCAT3030598
3030599ATTCGAGAGCAAGATCCATTAAAACAAGGATTGAAACATTGTATCAGTAAGATGTGTACTAAGAGCAATGCAA3030671
3030672ATTCGAGAGCAAGATCCATTAAAACAAGGATTGAAACCCCCCGTATATGCTTTCTCAAAAAGAGAGAGCGTAG3030744
3030745ATTCGAGAGCAAGATCCATTAAAACAAGGATTGAAACATATCGGCATTGCAGGCACGGATAAAGATCTTCT3030815
3030816ATTCGAGAGCAAGATCCATTAAAACAAGGATTGAAACTAATAAGCAGTTTCAAAAATATACTAAATAAAAA3030886
3030887ATTCGAGAGCAAGATCCATTAAAACAAGGATTGAAACCTGATCCAACGCTTGATATGAACTTTGAACGAGT3030957
3030958ATTCGAGAGCAAGATCCATTAAAACAAGGATTGAAACTTAGAGTACGAAGGTCTTGATCTTGAGACTATAA3031028
3031029ATTCGAGAGCAAGATCCATTAAAACAAGGATTGAAACCTGTAAATGTTGCGCCTGTTCCATTAAAACAAGGATTGAAACTTAGGGGAGTTGTTACAGGGGATTAATGATATTCCTG3031144
3031145ATTCGAGAGCAAGATCCATTAAAACAAGGATTGAAACTTCGATTTCCGAAACTGATAAACTCATCTCAAAAG3031216
3031217ATTCGAGAGCAAGATCCATTAAAACAAGGATTGAAACTCATAGGGACTCCCCATTCTGCAGCTTCCGGGCTAATG3031291
3031292ATTCGAGAGCAAGATCCATTAAAACAAGGATTGAAACAACCTAGTGGGTTTGTATGTAAACAGATAAAAATC3031363
3031364ATTCGAGAGCAAGATCCATTAAAACAAGGATTGAAACTTTGTGATGTCTTTGTGTGTGTTATTTAGTATCTCAA3031437
3031438ATTCGAGAGCAAGATCCATTAAAACAAGGATTGAAACAGAGTTGGTATAAAGCAAAGAGAGTCAGGCAGATTT3031510
3031511ATTCGAGAGCAAGATCCATTAAAACAAGGATTGAAACTCCCATGTTTCTTTTGTAATGTCTTCGACGTGATACGT3031585
3031586ATTCGAGAGCAAGATCCATTAAAACAAGGATTGAAACGTCCAGGGTGGTTCTATTCGTCGCTTGTAGGGGCTC3031658
3031659ATTCGAGAGCAAGATCCATTAAAACAAGGATTGAAACTCATCCAGTACCCATTCAGCTTTGGTTCCTTTTTT3031730
3031731ATTCGAGAGCAAGATCCATTAAAACAAGGATTGAAACCGACAGCCTCACGCGAAATGAACGTGTGATATCCCTA3031804
3031805ATTCGAGAGCAAGATCCATTAAAACAAGGATTGAAACCTTTCATGCTCAGTTCCTCCAAAAAGGTATTAGGCGT3031878
3031879ATTCGAGAGCAAGATCCATTAAAACAAGGATTGAAACTTGAAGATAATGCAGATGAAATAGAAGAACTAACC3031950
3031951ATTCGAGAGCAAGATCCATTAAAACAAGGATTGAAACAGGGTATTCCAGGTTGTTGAGAATATCTTTGTTTT3032022
3032023ATTCGAGAGCAAGATCCATTAAAACAAGGATTGAAACATAGTGACACGGTGGATACCGTAAAGGGAAATGACAG3032096
3032097ATTCGAGAGCAAGATCCATTAAAACAAGGATTGAAACTTCTAAGGCTTTTTGAGCGCATTTCTCGACAAGT3032167
3032168ATTCGAGAGCAAGATCCATTAAAACAAGGATTGAAACACCCCTGAGAGCTGCACGGTCCTGAGCATAAACGAGG3032241
3032242ATTCGAGAGCAAGATCCATTAAAACAAGGATTGAAACTAGTCGTAGGTGCGTTTGATTCTGTCAAAATTAATA3032314
3032315ATTCGAGAGCAAGATCCATTAAAACAAGGATTGAAACACAGGTTCTCCATCGGCTCAGCCATCGTATTAATTACG3032389
3032390ATTCGAGAGCAAGATCCATTAAAACAAGGATTGAAACATGATTGCGGTCTTGCCACACCCCGGGCCGCCGA3032460
3032461ATTCGAGAGCAAGATCCATTAAAACAAGGATTGAAACTTCTGGGATAAAATTAAACAGTGGTCACTGGTAAG3032532
3032533ATTCGAGAGCAAGATCCATTAAAACAAGGATTGAAACTCTCAATTTCTTCGAAATTTGCAGCCCGCATCGCTGG3032606
3032607ATTCGAGAGCAAGATCCATTAAAACAAGGATTGAAACTGCTTAGTCATGCACTCATCTATAATGTCAATAAGAT3032680
3032681ATTCGAGAGCAAGATCCATTAAAACAAGGATTGAAACTTTGTGAAGTGTATGTTATGGATTCGCCCTACTTGG3032753
3032754ATTCGAGAGCAAGATCCATTAAAACAAGGATTGAAACGGCTGGATTACCCACCACTCACCGCCGCCGTATATAT3032827
3032828ATTCGAGAGCAAGATCCATTAAAACAAGGATTGAAACTCAACCCGTCCGCAATCCATACCGGGAACTTTCCAG3032900
3032901ATTCGAGAGCAAGATCCATTAAAACAAGGATTGAAACTTGTCATTCCGAAAGAGCAAACGATGCAGGGTCTAA3032973
3032974ATTCGAGAGCAAGATCCATTAAAACAAGGATTGAAACCCGTTCCATTCACGGCAACGCATACGGCAACTGACGG3033047
3033048ATTCGAGAGCAAGATCCATTAAAACAAGGATTGAAACCTCAGAAAAGAAGCATTCCTAGCCGACCCCATGATAAGC3033123
3033124ATTCGAGAGCAAGATCCATTAAAACAAGGATTGAAACCTCCTGATTTCAGAATAACTGGAGATGTAAGTACGT3033196
3033197ATTCGAGAGCAAGATCCATTAAAACAAGGATTGAAACTACTGCTTGCCTATCATATCCTCTTCGAGAAACTCAG3033270
3033271ATTCGAGAGCAAGATCCATTAAAACAAGGATTGAAACCACTTTCCTCCATACACTTTCCTCCATAACGAAAAA3033343
3033344ATTCGAGAGCAAGATCCATTAAAACAAGGATTGAAACAAATTTCGTTCTGGACCTTCAGAGCCTGGATAAGT3033415
3033416ATTCGAGAGCAAGATCCATTAAAACAAGGATTGAAACCTCCGTTTGCTCAGAACTACCCGATATATCAGCCT3033487
3033488ATTCGAGAGCAAGATCCATTAAAACAAGGATTGAAACCTTATTTCCACATATTCAAAACTTTTTCAGTAGCATC3033561
3033562ATTCGAGAGCAAGATCCATTAAAACAAGGATTGAAACCGATTTCATGTTTTAAATTGGTAAAAAATGCGTATT3033634
3033635ATTCGAGAGCAAGATCCATTAAAACAAGGATTGAAACTCGAACTATACCCCTCCGGGTATTCTGGTAAGTTTAACA3033710
3033711ATTCGAGAGCAAGATCCATTAAAACAAGGATTGAAACCTGTCCTGCGGTACTCATCATTGACATAAAACTCGA3033783
3033784ATTCGAGAGCAAGATCCATTAAAACAAGGATTGAAACTTCCAGTCTCCTCTTACTATGGGAAAGGCAGCAGGTAC3033858
3033859ATTCGAGAGCAAGATCCATTAAAACAAGGATTGAAAC3033895
Left flanking sequence : Till position 3029861 (length bp)
GTATTTATAAAGGGTTTGATAATATCCCAACAAGAAATTTAGTTTTAATATAGGGCTAATCTCAGGCTTT
TTCTAGCCAAATAACGGAAAATTTTGCCCT
Right flanking sequence : From position 3033895 (length bp)
CTAAGTAGGTTATTGATATTTGTTTTATTGTCATTACTTGCCGCAGAATATTCAAAAAAACAAAACCGTT
AGGAATCATATTATCAAAACTTATACCATG
Print the CRISPR sequence : From position bp To position bp