Institut de Génétique et Microbiologie

CRISPR details


Home About CRISPRs News FAQs Help Contact Us Examples IGM
Université Paris Sud

Navigation

Home page
CRISPRs database
Browse CRISPRs
BLAST CRISPRs
FlankAlign
CRISPRs utilities
My CRISPRs DB
CRISPRs finder
CRISPRs comparison

Other Tools

CRISPRcompar
CRISPRtionary
CRISPRfinder

GPMS Links

GPMS Team
Tandem Repeats DB
MLVA Web Service


NC_000909_10                                                                                                                 top


Strain : Methanocaldococcus jannaschii DSM 2661 RefSeq :NC_000909 (chromosome circular)
CRISPR id : NC_000909_10
DR consensus (30 bp) : GTTAAAATCAGACCTCTTGGAGGATGGAAANumber of repetitions :8
Begin Position : 501491 End Position : 501989

501491GTTAAAATCAGACCTCTTGGAGGATGGAAAGTTGAAAATATTTTGATGATTTCTTACATACTTTTTA 501557
501558GTTAAAATCAGACCTCTTGGAGGATGGAAAGGATAGTGGGGGCTGGTATTGGGATTGTGGAATATGGACGGG 501629
501630GTTAAAATCAGACCTCTTGGAGGATGGAAAGTTAAAGGAGGTAATCTAACGATGAGGGAGGGCAGA 501695
501696GTTAAAATCAGACCTCTTGGAGGATGGAAAGGTGTGTGTGCGTGTGTTGGGGGAGGCAG 501754
501755GTTAAAATCAGACCTCTTGGAGGATGGAAAGTTATTTCGATAGCTTCCTTGGCATCCTCTGCTTCAA 501821
501822GTTAAAATCAGACCTCTTGGAGGATGGAAAACTTGATGCCGTAAAAAATCTTAGATTGCTAACCCAAT 501889
501890GTTAAAATCAGACCTCTTGGAGGATGGAAACTTTTCAAATACTTCTACTTTCAAATTGTAACTATCATAA 501959
501960ATTAAAATAAGACCTCTTGGAGGCTAACAA501989
Left flanking sequence : Till position 501491 (length bp)
TTTATATTGTAAGATGGTTATTTATCCTTAGAAAAATATGGTATAGAAAAGCTTAAATATTAAGAGTGAT
GAAGTATATTATGTTGTGAATGATTGCCCT
Right flanking sequence : From position 501989 (length bp)
AAACTATTTTAAAAACTAAAAATAGCAACTAAAAAATAATTATTTTTCTTCTCTATGTTGTAGATGATGA
GATAATTTTAGCTATTCTGTATGGAATTAT
Print the CRISPR sequence : From position bp To position bp