Institut de Génétique et Microbiologie

CRISPR details


Home About CRISPRs News FAQs Help Contact Us Examples IGM
Université Paris Sud

Navigation

Home page
CRISPRs database
Browse CRISPRs
BLAST CRISPRs
FlankAlign
CRISPRs utilities
My CRISPRs DB
CRISPRs finder
CRISPRs comparison

Other Tools

CRISPRcompar
CRISPRtionary
CRISPRfinder

GPMS Links

GPMS Team
Tandem Repeats DB
MLVA Web Service


NC_006624_1                                                                                                                 top


Strain : Thermococcus kodakarensis KOD1 RefSeq :NC_006624 (chromosome circular)
CRISPR id : NC_006624_1
DR consensus (30 bp) : ATTTCAATTCTCCTAGAGTCTTATTGCAACNumber of repetitions :16
Begin Position : 373033 End Position : 374072

373033CTTTCAATTCTCTTAGAGTCTTATTGCAACGGGCGCTCCGTGACGTCACCGAGGCACCTAACACCTA 373099
373100ATTTCAATTCTCCTAGAGTCTTATTGCAACACGGCACCACCCCTGCAAACACCACCAGCCAAAGCACGG 373168
373169ATTTCAATTCTCCTAGAGTCTTATTGCAACTTTTCCGAAGTTCACTCCTGAGGCCGAGAGGAGGATTG 373236
373237ATTTCAATTCTCCTAGAGTCTTATTGCAACACATAGATATAGAGAAGCCCGCAGACATCAAGAAGGCG 373304
373305ATTTCAATTCTCCTAGAGTCTTATTGCAACGTGATGGAGGTGAAAGCCGATGTCTGATGTCCAGATTC 373372
373373ATTTCAATTCTCCTAGAGTCTTATTGCAACGAATGGCGATGAAGAGCAGGCGAAGATTGACGCTCAAA 373440
373441ATTTCAATTCTCCTAGAGTCTTATTGCAACTATCCTCCTCACCGCTGGCCTCTGCGCCGTACCCTT 373506
373507ATTTCAATTCTCCTAGAGTCTTATTGCAACCAAAGAACCCGAACCCTACCACCCTCGCGGAATTG 373571
373572ATTTCAATTCTCCTAGAGTCTTATTGCAACTTTCGCGGAGTATTTGCCTTAAATCCTCCTTGATAAT 373638
373639ATTTCAATTCTCCTAGAGTCTTATTGCAACTTTCACGTTACCTCACTCAGAAAGCCCTCGCAAACTC 373705
373706GTTTCAATTCTCCTAGAGTCTTATTGCAACAGAAAGCACCAGTATGAGATAGCTCCAATGAAAAACCT 373773
373774GTTTCAATTCTCCTAGAGTCTTATTGCAACTCGTTGAACCCGTTAAAAGCCATCTCCCCATCTTCGT 373840
373841GTTTCAATTCTCCTAGAGTCTTATTGCAACTTCTCGACATGAAAAGGGAGATGGGCAGAGTCATTGA 373907
373908GTTTCAATTCTCCTAGAGTCTTATTGCAACTTGAGTTTGAAGAGCTTTACCTTTTTCTTTGCGTGGAC 373975
373976GTTTCAATTCTCCTAGAGTCTTATTGCAACTACCCGAAGCAGAACATGAAACATTTATCGCCTTAAC 374042
374043GTTTCAATTCTCCTAGAGTCTTATTGCAAC374072
Left flanking sequence : Till position 373033 (length bp)
TTTTCTCGGACTTTCTCTTTCTGAATTCATTTTGAATTTTTCTCAGAGTTTTTATTGCAACTGTGCGGGA
TGCATTCAGGGAAGCCGTGGCCATGACGTA
Right flanking sequence : From position 374072 (length bp)
AGGGCGGTTTTTTCCTCCTTTCTCCCTACAAACTACTAAGAACGCTCGGATCTTATAAGCTTTTCCGCAA
AGGGTGCTCTAAAAAGCCCCTAACGGTCCC
Print the CRISPR sequence : From position bp To position bp