Institut de Génétique et Microbiologie

CRISPR details


Home About CRISPRs News FAQs Help Contact Us Examples IGM
Université Paris Sud

Navigation

Home page
CRISPRs database
Browse CRISPRs
BLAST CRISPRs
FlankAlign
CRISPRs utilities
My CRISPRs DB
CRISPRs finder
CRISPRs comparison

Other Tools

CRISPRcompar
CRISPRtionary
CRISPRfinder

GPMS Links

GPMS Team
Tandem Repeats DB
MLVA Web Service


NC_007484_1                                                                                                                 top


Strain : Nitrosococcus oceani ATCC 19707 RefSeq :NC_007484 (chromosome circular)
CRISPR id : NC_007484_1
DR consensus (28 bp) : GTTCACCGCCGCACAGGCGGTTTAGAAANumber of repetitions :7
Begin Position : 3128058 End Position : 3128445

3128058GTTCACCGCCGCACAGGCGGTTTAGAAATACCAAGTACATCAATATCTCTGGAGTTATTT 3128117
3128118GTTCACCGCCGCACAGGCGGTTTAGAAATAGACAGCATTCTGAGCTGGGCGGTGGCGGTA 3128177
3128178GTTCACCGCCGCACAGGCGGTTTAGAAAAATTTAAAAAGAACAGAAGTCCCGTGTTATCG 3128237
3128238GTTCACCGCCGCACAGGCGGTTTAGAAAACCTACTCACCAAAGATTGGGGTTTATCTATC 3128297
3128298GTTCACCGCCGCACAGGCGGTTTAGAAAACCCTGGGGCTAGGCTTGGAAGTCAAGCGCGT 3128357
3128358GTTCACCGCCGCACAGGCGGTTTAGAAAGCTATAAAAGTTAATTAGTGAGAAAAGGGGAT 3128417
3128418GTTCACCGCCGCACAGGCGGTTTAGAAA3128445
Left flanking sequence : Till position 3128058 (length bp)
GTAATAACAAATAATTAAATGAATTTAAAAAAAGTAAGGTTTTAGGCTAATGTTCGACGCAAGACTTTAT
GGTTGCTACAGTTTTTAGCTTTAATTTACT
Right flanking sequence : From position 3128445 (length bp)
GAAGCAAGTTCAGGACTTACGCAAAAGCGTATTTAAGGGTCCCCATGGTGTTGAAAGAGCAGTAGAGTTT
AGGACATGAGCATATCGCTAACGTGCTTGG
Print the CRISPR sequence : From position bp To position bp