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CRISPRs details
NC_009012_4
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Page manual
  
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NC_009012_4                                                                                                                 
top
Strain :
Clostridium thermocellum ATCC 27405
RefSeq :
NC_009012 (chromosome circular)
CRISPR id :
NC_009012_4
DR consensus (37 bp) :
GTTGAAGTGGTACTTCCAGTAAAACAAGGATTGAAAC
Number of repetitions :
79
Begin Position :
3785203
End Position :
3790988
3785203
GTTGAAGTGGTACTTCCAGTAAAACAAGGATTGAAAC
ATGTAGATGAATGATTACGATGTTGGAGAAATATTT
3785275
3785276
GTTGAAGTGGTACTTCCAGTAAAACAAGGATTGAAAC
CTGTATCCGCATGTCCTACAGCAGATGTCACATCTG
3785348
3785349
GTTGAAGTGGTACTTCCAGTAAAACAAGGATTGAAAC
ATCTTTTGTATATCAAAGGAAGCTACTTCTGTAATTA
3785422
3785423
GTTGAAGTGGTACTTCCAGTAAAACAAGGATTGAAAC
AGTGCTGCAAACATCACAGCAGTATTCAATCAGGAA
3785495
3785496
GTTGAAGTGGTACTTCCAGTAAAACAAGGATTGAAAC
TCGCATTTTCTACATCAAACAAAGTTGCTCCGTCGT
3785568
3785569
GTTGAAGTGGTACTTCCAGTAAAACAAGGATTGAAAC
CCTCCAAGTTTCAGTCTCCATGAAGTACCATTCCCCT
3785642
3785643
GTTGAAGTGGTACTTCCAGTAAAACAAGGATTGAAAC
GTGAAACTTGCCGGTTTTTATGGCGTATCTGTAGATT
3785716
3785717
GTTGAAGTGGTACTTCCAGTAAAACAAGGATTGAAAC
TCAAAGTGCACAAATAAAAAGTGCTTGTGTCAATAC
3785789
3785790
GTTGAAGTGGTACTTCCAGTAAAACAAGGATTGAAAC
CACAAGTTGCAAATGATGTATTGCCGCCGGTAATTTCC
3785864
3785865
GTTGAAGTGGTACTTCCAGTAAAACAAGGATTGAAAC
GCCATCAGTGGCCGATAGATAAGGCACAATATCTA
3785936
3785937
GTTGAAGTGGTACTTCCAGTAAAACAAGGATTGAAAC
GTTGCTATTCGAGCAGAAAGAAACCCAAAAGTTATC
3786009
3786010
GTTGAAGTGGTACTTCCAGTAAAACAAGGATTGAAAC
GTGATATTATATTGAATCTGTTTAAATGAGATATTCA
3786083
3786084
GTTGAAGTGGTACTTCCAGTAAAACAAGGATTGAAAC
CCACTGTCTTCTGTCAATTGTTATTATATCATATATT
3786157
3786158
GTTGAAGTGGTACTTCCAGTAAAACAAGGATTGAAAC
ATGTATGTTCAAATACATCATAAATATGGTAAGGA
3786229
3786230
GTTGAAGTGGTACTTCCAGTAAAACAAGGATTGAAAC
TTGATAATGTTCTTTTCAATAGTGCCAAGGTCTAATCCT
3786305
3786306
GTTGAAGTGGTACTTCCAGTAAAACAAGGATTGAAAC
TCCCCGCCGTGTTAATCCGATTGTAAACCTATTCGTCAA
3786381
3786382
GTTGAAGTGGTACTTCCAGTAAAACAAGGATTGAAAC
ACTAATTTGATTTATAAAAATGACTTAATTACAAATGA
3786456
3786457
GTTGAAGTGGTACTTCCAGTAAAACAAGGATTGAAAC
CTATAGATATGTATGGAGTACCGAAAGGCGACCCAT
3786529
3786530
GTTGAAGTGGTACTTCCAGTAAAACAAGGATTGAAAC
AATACGGTGTCAGTGACGTTTTGAACCTCAACCAAG
3786602
3786603
GTTGAAGTGGTACTTCCAGTAAAACAAGGATTGAAAC
ACTCTCCCATGTTCATTCCTCCTCTTTTCAAATTT
3786674
3786675
GTTGAAGTGGTACTTCCAGTAAAACAAGGATTGAAAC
AGATAGACGTACATATGACAGGAGGTTGAAGTTATT
3786747
3786748
GTTGAAGTGGTACTTCCAGTAAAACAAGGATTGAAAC
GAAGCTATGCCTTATGTGGGTGGACGCAGTTCTTCAGG
3786822
3786823
GTTGAAGTGGTACTTCCAGTAAAACAAGGATTGAAAC
CTATTTTGTAATAATCACTTTTAATTTCATAACCTACA
3786897
3786898
GTTGAAGTGGTACTTCCAGTAAAACAAGGATTGAAAC
AAATAGTACATAGGTGGAGAGCAGCAAACCCGCGAA
3786970
3786971
GTTGAAGTGGTACTTCCAGTAAAACAAGGATTGAAAC
TTTGCAACGTTTCCGTTGCTGTTAACTACATAGCAAG
3787044
3787045
GTTGAAGTGGTACTTCCAGTAAAACAAGGATTGAAAC
ACGATGAGCTTAAAAACGATTACTAAAGAGAGGATGG
3787118
3787119
GTTGAAGTGGTACTTCCAGTAAAACAAGGATTGAAAC
ATTTTTGCTTCTCTAGCTTGTCTTTTCGTATGTATG
3787191
3787192
GTTGAAGTGGTACTTCCAGTAAAACAAGGATTGAAAC
ACTGCTTTAGCGTGATCCTTGTGACCGTGCGATACA
3787264
3787265
GTTGAAGTGGTACTTCCAGTAAAACAAGGATTGAAAC
TGGACTTTGCTCAGGTCATTGGCCCGGAGAAACTGC
3787337
3787338
GTTGAAGTGGTACTTCCAGTAAAACAAGGATTGAAAC
TCATTCTTGCAAGCCTGAATCAGCCCTTTTAGATA
3787409
3787410
GTTGAAGTGGTACTTCCAGTAAAACAAGGATTGAAAC
GGTTCTATGATTTCGATATACGACCCGCCTCTATATCCG
3787485
3787486
GTTGAAGTGGTACTTCCAGTAAAACAAGGATTGAAAC
GTTTTCTTAATTTCAAATACTCTTTTTGCCATTTTT
3787558
3787559
GTTGAAGTGGTACTTCCAGTAAAACAAGGATTGAAAC
AATCCCAGCGAAGTCCTTTAGAGAACAGATTTTTGA
3787631
3787632
GTTGAAGTGGTACTTCCAGTAAAACAAGGATTGAAAC
TTAATTTTAAAGACTTATTCCGCAATGATATAAATATG
3787706
3787707
GTTGAAGTGGTACTTCCAGTAAAACAAGGATTGAAAC
ACTTTGCCTAAGAAGAATAAAAGTATTCGTAGAATATT
3787781
3787782
GTTGAAGTGGTACTTCCAGTAAAACAAGGATTGAAAC
CTAACATTATTCACACCTCCCATCAACGAACCTTTTTT
3787856
3787857
GTTGAAGTGGTACTTCCAGTAAAACAAGGATTGAAAC
ACTTAGCCGTTGCAGTGGGCTTACCTTCTAAAAATT
3787929
3787930
GTTGAAGTGGTACTTCCAGTAAAACAAGGATTGAAAC
ACTTTCCTTGATATGTTTACCTGTAAAGTAAAAATA
3788002
3788003
GTTGAAGTGGTACTTCCAGTAAAACAAGGATTGAAAC
CTTATATATAGAACATAAATTTTTCTATAATATTAA
3788075
3788076
GTTGAAGTGGTACTTCCAGTAAAACAAGGATTGAAAC
CCCTTACAGTGGCGATATTTGTGGAATGAGGCTGT
3788147
3788148
GTTGAAGTGGTACTTCCAGTAAAACAAGGATTGAAAC
ATCTCTTGTAGAATTTTCTCTGCCTTTTCTAAGCTAC
3788221
3788222
GTTGAAGTGGTACTTCCAGTAAAACAAGGATTGAAAC
ACAGTTATCATAGGCTATCCTCCTTATAAATGTTAA
3788294
3788295
GTTGAAGTGGTACTTCCAGTAAAACAAGGATTGAAAC
AATAATCCAAAAGCATTTCTACTGCTTTTGGAAATTT
3788368
3788369
GTTGAAGTGGTACTTCCAGTAAAACAAGGATTGAAAC
ATATTTACTCCGGCATCCCTCAGCCGGCGAAAAAGGT
3788442
3788443
GTTGAAGTGGTACTTCCAGTAAAACAAGGATTGAAAC
ATAATTCTTCTCGTTTTTGTTTTAATTCGTTTATT
3788514
3788515
GTTGAAGTGGTACTTCCAGTAAAACAAGGATTGAAAC
GTAATAAGCTGTCCAATCACCTCCTAGTTTTCCTGG
3788587
3788588
GTTGAAGTGGTACTTCCAGTAAAACAAGGATTGAAAC
TAGAACTTGAAAGAGAATCCTTCAGGGAGAGTGGTACT
3788662
3788663
GTTGAAGTGGTACTTCCAGTAAAACAAGGATTGAAAC
TATCTTCAAAGTAATAGCTGTTATATGTGTCAAGTTC
3788736
3788737
GTTGAAGTGGTACTTCCAGTAAAACAAGGATTGAAAC
TTAATTCATCGCCATTTTTGCCTATAAGTCCATAAA
3788809
3788810
GTTGAAGTGGTACTTCCAGTAAAACAAGGATTGAAAC
CTTCTTCGAAGCTACTAAAGGTGGCCGTGCAGTAGT
3788882
3788883
GTTGAAGTGGTACTTCCAGTAAAACAAGGATTGAAAC
ATAGATAAGGCTATTGCAAGAGTAGCGAATGTGCTA
3788955
3788956
GTTGAAGTGGTACTTCCAGTAAAACAAGGATTGAAAC
CAAATATTTCAGAAGCTATTGCGGATATATTTACTGTG
3789030
3789031
GTTGAAGTGGTACTTCCAGTAAAACAAGGATTGAAAC
TTGAATTCCTGCAATGTGGCAGGCTTTTCTCAACCTAGG
3789106
3789107
GTTGAAGTGGTACTTCCAGTAAAACAAGGATTGAAAC
GTCCCTGTGATTTCAGCCAATTTATCGCATTTTCAATT
3789181
3789182
GTTGAAGTGGTACTTCCAGTAAAACAAGGATTGAAAC
ACATACAGTTCGGTGTTTTCATCTAGTGCTACATTTATT
3789257
3789258
GTTGAAGTGGTACTTCCAGTAAAACAAGGATTGAAAC
CCAGCAGGTTGAGCGTTAGGCAGGTTTCCCTGCCCG
3789330
3789331
GTTGAAGTGGTACTTCCAGTAAAACAAGGATTGAAAC
GTGGAAGATGCGTTGTTTATGTCAGCAATTTCCGG
3789402
3789403
GTTGAAGTGGTACTTCCAGTAAAACAAGGATTGAAAC
CAAAATGGCAGGTGGTAAAACCACAGCTAATACATC
3789475
3789476
GTTGAAGTGGTACTTCCAGTAAAACAAGGATTGAAAC
GTTTCATCAACATCCATCTCGTCTACATAGAACTCA
3789548
3789549
GTTGAAGTGGTACTTCCAGTAAAACAAGGATTGAAAC
ATAACATATTTTAAAGCAAAAAGCAGAAAATCACTGG
3789622
3789623
GTTGAAGTGGTACTTCCAGTAAAACAAGGATTGAAAC
TGATTGTAAAGGAATATGTATCCCCAAGCCTTACA
3789694
3789695
GTTGAAGTGGTACTTCCAGTAAAACAAGGATTGAAAC
TGGATAGTGCAAACATAGATGAAGCCTCCGTAGGCCTT
3789769
3789770
GTTGAAGTGGTACTTCCAGTAAAACAAGGATTGAAAC
TCTATTTCAGCAACAATATATTTGGCAGCCGATGAAT
3789843
3789844
GTTGAAGTGGTACTTCCAGTAAAACAAGGATTGAAAC
ATCATTGTATATATCTTTGGAGTAACGTATAATACCC
3789917
3789918
GTTGAAGTGGTACTTCCAGTAAAACAAGGATTGAAAC
TTGATAATGTTCTTTTCAATAGTGCCAAGGTCTAATC
3789991
3789992
GTTGAAGTGGTACTTCCAGTAAAACAAGGATTGAAAC
ACAGGAACGTGCGTTCTCTGGACGAGGTAACTATCGT
3790065
3790066
GTTGAAGTGGTACTTCCAGTAAAACAAGGATTGAAAC
TAGCACACAACAGCAAAAAAACAAAGAAAAAAAGA
3790137
3790138
GTTGAAGTGGTACTTCCAGTAAAACAAGGATTGAAAC
GCACCAACTTGTCTTTTTTGATGAGGCTTGCAACAA
3790210
3790211
GTTGAAGTGGTACTTCCAGTAAAACAAGGATTGAAAC
ATAATGTGCTGCTGGATGCCCGTACAGTCTTCCACTGTA
3790286
3790287
GTTGAAGTGGTACTTCCAGTAAAACAAGGATTGAAAC
TAGATTGCGAAAAGCCTGCCACATTGCAGGTCACAAGGT
3790362
3790363
GTTGAAGTGGTACTTCCAGTAAAACAAGGATTGAAAC
TTGTTTTTTCACTTATAGACTTAATTCAGTGTGGC
3790434
3790435
GTTGAAGTGGTACTTCCAGTAAAACAAGGATTGAAAC
CTTTCTCAATGGCTGACTTCGATGCGCCCTGGGCAAGCATT
3790512
3790513
GTTGAAGTGGTACTTCCAGTAAAACAAGGATTGAAAC
GTGCTGCTATCTCGGCTATTCTTTCATCTATACTCA
3790585
3790586
GTTGAAGTGGTACTTCCAGTAAAACAAGGATTGAAAC
TTTGCTCTTTATCCGGTGCTCTTATCTCATTCACA
3790657
3790658
GTTGAAGTGGTACTTCCAGTAAAACAAGGATTGAAAC
ACGAGAACGGGAAAGCAATATTGAGAAAACCCTTTG
3790730
3790731
GTTGAAGTGGTACTTCCAGTAAAACAAGGATTGAAAC
TTGGCGGCATAGCTTCTATTATAGAAAATTCTACT
3790802
3790803
GTTGAAGTGGTACTTCCAGTAAAACAAGGATTGAAAC
TTATATCGAAGAAAAAAGAACAAAAGTGAGGCGATT
3790875
3790876
GTTGAAGTGGTACTTCCAGTAAAACAAGGATTGAAAC
ATAATTTCGGGAGTGTAGAATTTCAACTCGGCAATAAGA
3790951
3790952
GTTGAAGTGGTACTTCCAGTAAAACAAGGATTGAAAC
3790988
Left flanking sequence : Till position 3785203 (length
bp)
TTGATAAAAATCGACTATTTTTTGATGAAAAATGTGCAAAAAAGTTTCGTCAAAAAAATCTTGTAGGCTT
TGAAAATGGCGGGATTTGACTTCGAGGACT
Right flanking sequence : From position 3790988 (length
bp)
GAATGATTGAATCAATAACCATTATTGCCTGCAATTAGTTGAAGTGGTACTTCCAGAAACAAGGATTGAA
ACCATACTTCTATCAGTTTGTCGCGTTCTT
Print the CRISPR sequence : From position
bp To position
bp