Institut de Génétique et Microbiologie

CRISPR details


Home About CRISPRs News FAQs Help Contact Us Examples IGM
Université Paris Sud

Navigation

Home page
CRISPRs database
Browse CRISPRs
BLAST CRISPRs
FlankAlign
CRISPRs utilities
My CRISPRs DB
CRISPRs finder
CRISPRs comparison

Other Tools

CRISPRcompar
CRISPRtionary
CRISPRfinder

GPMS Links

GPMS Team
Tandem Repeats DB
MLVA Web Service


NC_010483_1                                                                                                                 top


Strain : Thermotoga sp. RQ2 RefSeq :NC_010483 (chromosome circular)
CRISPR id : NC_010483_1
DR consensus (30 bp) : GTTTCAATAGTTCCTTAGAGGTATGGAAACNumber of repetitions :16
Begin Position : 544183 End Position : 545204

544183GTTTCAATAGTTCCTTAGAGGTATGGAAACTTTCTTATATGATGTATGACCAGTCCAACTTGTTTTCAT 544251
544252GTTTCAATAGTTCCTTAGAGGTATGGAAACCCGATATTGAAAAAGAGCTCGAATAATGGAAAAATG 544317
544318GTTTCAATAGTTCCTTAGAGGTATGGAAACTATATTTTGCCGTGTCAGGATATCCGATGTATGATT 544383
544384GTTTCAATAGTTCCTTAGAGGTATGGAAACAGCACTTCCTTTTCTCCCTCAAGTTCCTTGAGTTT 544448
544449GTTTCAATAGTTCCTTAGAGGTATGGAAACAAACTGGGGGAGGGTGCTACAGATGAAGACAATCA 544513
544514GTTTCAATAGTTCCTTAGAGGTATGGAAACGAAGTAGAGATAAATCTATATCCGCTAAAGAAATCGC 544580
544581GTTTCAATAGTTCCTTAGAGGTATGGAAACTGGTAAATTCGGACAACAAAATGAATATCGGGAAAT 544646
544647GTTTCAATACTTCCTTAGAGGTATGGAAACGTTTCTGTGAATGTTACATAAATGTATTGCGTTTCGCT 544714
544715GTTTCAATACTTCCTTAGAGGTATGGAAACCAATTTATTGTGCCCTTTAGTTGTCCTCTCCACTCT 544780
544781GTTTCAATACTTCCTTAGAGGTATGGAAACACAACAGCGAAGTCGTCGTCGACCGTCATCACTAT 544845
544846GTTTCAATACTTCCTTAGAGGTATGGAAACCATTTTTGAAGTATTCCTCATCATCAGAGTTTTCG 544910
544911GTTTCAATACTTCCTTAGAGGTATGGAAACGCGACCTCAAAAAGCAGGGTCTGGTAGAACCTTCG 544975
544976GTTTCAATACTTCCTTAGAGGTATGGAAACACAGGACCAGGCCCTGTGTAACCACCTTCCTGTTTGC 545042
545043GTTTCAATACTTCCTTAGAGGTATGGAAACAACCGGCGGGCGACATGGATAAAAATGAACGGAAAC 545108
545109GTTTCAATACTTCCTTAGAGGTATGGAAACGAGATCCAACAAAATATCTACCACTTGCTTGGGACC 545174
545175GTTTCAATACTTCCTTAGAGGTATGGAACC545204
Left flanking sequence : Till position 544183 (length bp)
TGTGTGTTAGAATGGTTTATGGAAAGGGAGGATATGGAAGATAAAAAAACATCTTGCTTTCAGATTGTGT
TTGTGGTATAATTTCTCTTGAACTCAACGG
Right flanking sequence : From position 545204 (length bp)
ACCCGATTCCGTGAGATATGAGAGAACCATTTCACGAAGCAGGGGAAAACCCTGCTTTTTGTTTTTTGTT
AAAATTCTTGGGGAATTCTATCTTCGAGGA
Print the CRISPR sequence : From position bp To position bp