Institut de Génétique et Microbiologie

CRISPR details


Home About CRISPRs News FAQs Help Contact Us Examples IGM
Université Paris Sud

Navigation

Home page
CRISPRs database
Browse CRISPRs
BLAST CRISPRs
FlankAlign
CRISPRs utilities
My CRISPRs DB
CRISPRs finder
CRISPRs comparison

Other Tools

CRISPRcompar
CRISPRtionary
CRISPRfinder

GPMS Links

GPMS Team
Tandem Repeats DB
MLVA Web Service


NC_011059_1                                                                                                                 top


Strain : Prosthecochloris aestuarii DSM 271 RefSeq :NC_011059 (chromosome circular)
CRISPR id : NC_011059_1
DR consensus (28 bp) : GAAACACCCCCACGCCTGTGGGGAAGACNumber of repetitions :38
Begin Position : 1536024 End Position : 1538308

1536024AGAACCCCCCCACGCCTGTGGGGAAGACTCCTTCCGGCGTGACGAAGGTGCAGGATGGGTG 1536084
1536085AGAACCCCCCCACGCCTGTGGGGAAGACTGTGGATCTTGCTGATCTTGGTGCTTCGGGGTA 1536145
1536146GAAACACCCCCACGCCTGTGGGGAAGACTCGACAAGCGCTACTATGAAGATGGGGGGCTTG 1536206
1536207GAAACACCCCCACGCCTGTGGGGAAGACAATCGCACTGATGATGTGAATGGGTCTTTTGAG 1536267
1536268GAAACACCCCCACGCCTGTGGGGAAGACAGAAAACCCGGCCACCTCAACGCGAATCAAGGA 1536328
1536329GAAACACCCCCACGCCTGTGGGGAAGACGACGCGGCTTGCCTTGAGGTCTGGGCGAAGGCA 1536389
1536390GAAACACCCCCACGCCTGTGGGGAAGACGGAAATAGAGACCGGCAGCAGGAACGCGCACTG 1536450
1536451GAAACACCCCCACGCCTGTGGGGAAGACAGGGCAAGAATGAAAATGGATCGTGGCCGCTGG 1536511
1536512GAAACACCCCCACGCCTGTGGGGAAGACGTGAGCTACGCCCACTTCGGCACGCTCACGCAG 1536572
1536573GAAACACCCCCACGCCTGTGGGGAAGACTTGGCCCACTGCTCGAAATGCGCAACGATGCCG 1536633
1536634GAAACACCCCCACGCCTGTGGGGAAGACCTTGCAGTCAACAACTCTTACAACTCTCATTGA 1536694
1536695GAAACACCCCCACGCATGTGGGGAAGACTCCCCTCCAGCGCATCAAGCCACCCCGCTACCG 1536755
1536756GAAACACCCCCACGCCTGTGGGGAAGACGGAGTAGACTGGTCACGTGTGACCTCAACAGTA 1536816
1536817GAAACACCCCCACGCCTGTGGGGAAGACCTGCTACCAAGTTTTATGGTGAAGTAATATTTA 1536877
1536878GAAACACCCCCACGCCTGTGGGGAAGACATGGGCTGAATACTTTGCACGTGCGGTCGGGCA 1536938
1536939GAAACACCCCCACGCCTGTGGGGAAGACGATGCTTCGGCGCTTGAGGAGACGACAGGAAAG 1536999
1537000GAAACACCCCCACGCCTGTGGGGAAGACTCCAGAAACCTCTCATACATCTCTGCCCTCTTG 1537060
1537061GAAACACCCCCACGCCTGTGGGGAAGACTCTGTCTTACTCTGATGAGCTCGTCGAGGAGAA 1537121
1537122GAAACACCCCCACGCCTGTGGGGAAGACCCGCAGCAGATCTGAGATGCGAGCTGTCGAGTG 1537182
1537183GAAACACCCCCACGCCTGTGGGGAAGACGGCGGATGATGTCATCTATAGGGGCCTGTGTCG 1537243
1537244GAAACACCCCCACGCCTGTGGGGAAGACGATACAATCAAAACAGTCATGCTCCTCAAACTG 1537304
1537305GAAACACCCCCACGCCTGTGGGGAAGACCGAAGCGTTCGCTCTAAGCCTGAACGAATACTT 1537365
1537366GAAACACCCCCACGCCTGTGGGGAAGACCGTAAATCCTTAACCTCTCGTTGATGAGCGGTG 1537426
1537427GAAACACCCCCACGCCTGTGGGGAAGACGATCTATTACTTTGGCTGAACCGCGCCGGTCTG 1537487
1537488GAAACACCCCCACGCCTGTGGGGAAGACAATTCCTTTATCTCTGGCGCAGACACGATGCCG 1537548
1537549GAAACACCCCCACGCCTGTGGGGAAGACCGAATATCTGGCAAAGCGAGAGATGATTCTGCG 1537609
1537610GAAACACCCCCACGCCTGTGGGGAAGACTCTGCTTATCGCCTGCTGCGTCTTACTTTTGAG 1537670
1537671GAAACACCCCCACGCCTGTGGGGAAGACATCTGGTACAGGGCTAACTCAGGAGGGCATGAG 1537731
1537732GAAACACCCCCACGCCTGTGGGGAAGACTTCCGGCAGTAGTCAAGCACAACCCGTACTGTA 1537792
1537793GAAACACCCCCACGCCTGTGGGGAAGACTTTTTATATGGAGCGAGACTCTGCTGCAGAAGG 1537853
1537854GAAACACCCCCACGCCTGTGGGGAAGACGCATTCTTTCCTGACCCCATCCAGCACAGCGTA 1537914
1537915GAAACACCCCCACGCCTGTGGGGAAGACACGCTAAAGGTAACGCTTTTATCGGAGGGTCAG 1537975
1537976GAAACACCCCCACGCCTGTGGGGAAGACGGTGTCGGCGCATGGGAGCGTGAACTTGAAGCA 1538036
1538037GAAACACCCCCACGCCTGTGGGGAAGACGCGTCCTGAGATCTTCAGCGTACAGCGCCTCAG 1538097
1538098GAAACACCCCCACGCCTGTGGGGAAGACAACCTTCTCCCCATCAGCGGTGTAAGCAATCGA 1538158
1538159GAAACACCCCCACGCCTGTGGGGAAGACTTGGTAGTAGTGACCAGGCTAACCAGATGTATG 1538219
1538220GAAACACCCCCACGCCTGTGGGGAAGACTTCCATCATTCACTCCTGTCAAATTTTAAAAAG 1538280
1538281GAAACACCCCCACGCCTGTGGGGAAGAC1538308
Left flanking sequence : Till position 1536024 (length bp)
GGATGACCAACTGCGCAGCATCTGTCAAACAACATAATTCACACAGAAGTTTCTGAGTACGTTCACAGTC
ATGATGGCTTGCTTGCATCGAATAAGGGGT
Right flanking sequence : From position 1538308 (length bp)
ACTGGAATTTACAGGGCTTTCAGCCGCCCGATCATGTTTTTGATTCTCGATTGGGTTCAGAATACTTCTC
AATAACGAGTTGCATTCCTGAAAGTTCAAT
Print the CRISPR sequence : From position bp To position bp