Institut de Génétique et Microbiologie

CRISPR details


Home About CRISPRs News FAQs Help Contact Us Examples IGM
Université Paris Sud

Navigation

Home page
CRISPRs database
Browse CRISPRs
BLAST CRISPRs
FlankAlign
CRISPRs utilities
My CRISPRs DB
CRISPRs finder
CRISPRs comparison

Other Tools

CRISPRcompar
CRISPRtionary
CRISPRfinder

GPMS Links

GPMS Team
Tandem Repeats DB
MLVA Web Service


NC_012880_2                                                                                                                 top


Strain : Dickeya dadantii Ech703 RefSeq :NC_012880 (chromosome circular)
CRISPR id : NC_012880_2
DR consensus (28 bp) : GTTCACTGCCGAGTAGGCAGCTTAGAAANumber of repetitions :62
Begin Position : 836654 End Position : 840342

836654GTTCACTGCCGAGTAGGCAGCTTAGAAAATTTTTCGGCGCCATGAGTCCAGCCGGTAAAT 836713
836714GTTCACTGCCGAGTAGGCAGCTTAGAAAAGGATGTCGGCCTGAGCAAACCGAACACCGGA 836773
836774GTTCACTGCCGAGTAGGCAGCTTAGAAAACCGGGCGCCAGCAGCAAACCTTTCACCGAAC 836833
836834GTTCACTGCCGAGTAGGCAGCTTAGAAAGCGATCTCTCGTCTGGTACTTCGTTGGATATC 836893
836894GTTCACTGCCGAGTAGGCAGCTTAGAAAACAGCAAGGCATGGACGCAGTGCGGGCCATGA 836953
836954GTTCACTGCCGAGTAGGCAGCTTAGAAAATGACGGTTCAACCGCAATAACAACTCGGTTT 837013
837014GTTCACTGCCGAGTAGGCAGCTTAGAAAATCTGGTCAATCTCGGCAAGGCGTTGCAGGAC 837073
837074GTTCACTGCCGAGTAGGCAGCTTAGAAAAAAGATCGTGTTCATTTTGAATGGTTTGGGCC 837133
837134GTTCACTGCCGAGTAGGCAGCTTAGAAATAACGGCAAGATCGATAAGATTATCGAGTTGC 837193
837194GTTCACTGCCGAGTAGGCAGCTTAGAAATCTTCGAATCCCTGCTTGAGCGATGAAAGCAA 837253
837254GTTCACTGCCGAGTAGGCAGCTTAGAAATGGCACGACAGCAGGAGATGCAAACAGGGAGG 837313
837314GTTCACTGCCGAGTAGGCAGCTTAGAAAAGCCCAAAGCATCGCGGAAAATGGCATCAAAC 837373
837374GTTCACTGCCGAGTAGGCAGCTTAGAAAGTGGTCTGAGCACAATACAGAAGCGTTCGCCG 837433
837434GTTCACTGCCGAGTAGGCAGCTTAGAAAAGGAATGTCTTTGCATCAGCCGGTCGAGGCGT 837493
837494GTTCACTGCCGAGTAGGCAGCTTAGAAACATCACAATTTACGCTGGGGAGGTGATATGGA 837553
837554GTTCACTGCCGAGTAGGCAGCTTAGAAATGCAAAATGACTTCATTGTCTGGCCTGCAACC 837613
837614GTTCACTGCCGAGTAGGCAGCTTAGAAAGAGCGTGCTCAGCAAATCAGACAGGGAATGAA 837673
837674GTTCACTGCCGAGTAGGCAGCTTAGAAAGAAATCATATGGGTGGCATTCGGGAACCCGAC 837733
837734GTTCACTGCCGAGTAGGCAGCTTAGAAAAATGTGTCAGGCGTTACCGTCGGCACTGGCTG 837793
837794GTTCACTGCCGAGTAGGCAGCTTAGAAATTGATGAGGTGACTTTTGATGGCGTGGCAGAT 837853
837854GTTCACTGCCGAGTAGGCAGCTTAGAAAAATCTCTTTGTTTGGGCCACGCTTTTCGGGTA 837913
837914GTTCACTGCCGAGTAGGCAGCTTAGAAAGCAGATGCTAAACAAGCGCGGCGAGATGTACAA 837974
837975GTTCACTGCCGAGTAGGCAGCTTAGAAATTATCGCCTACAAACCAACGGCAACCATCCTG 838034
838035GTTCACTGCCGAGTAGGCAGCTTAGAAAACCATACAGAACACTCGCGGCAGATGGCTTAT 838094
838095GTTCACTGCCGAGTAGGCAGCTTAGAAAAGTCTCGACGCCCAATCCTGCGCCAGCGCATT 838154
838155GTTCACTGCCGAGTAGGCAGCTTAGAAATCTTTCAGCATCGATTCCTGCCACTTGCGCGG 838214
838215GTTCACTGCCGAGTAGGCAGCTTAGAAAAGGTCAGCGAAGGAGACAGTGATCAGCCTGCC 838274
838275GTTCACTGCCGAGTAGGCAGCTTAGAAACAAACACCTCGCGCCCCAGCACATTCTGCATA 838334
838335GTTCACTGCCGAGTAGGCAGCTTAGAAAGTTACACCAAGTTTGGAAAGCTTTTCAAATAT 838394
838395GTTCACTGCCGAGTAGGCAGCTTAGAAATGTGGCACTGGAATATGAGAATCAATCACTTA 838454
838455GTTCACTGCCGAGTAGGCAGCTTAGAAAAGCAGATCACGGCGGTAGAGGTCGTACCCTGT 838514
838515GTTCACTGCCGAGTAGGCAGCTTAGAAAAACCATCAACGGCGCTGGGGCCAGCGTTATAA 838574
838575GTTCACTGCCGAGTAGGCAGCTTAGAAACAGTGGGTGCAGCCATCGCGATCTGTTGCTTT 838634
838635GTTCACTGCCGAGTAGGCAGCTTAGAAAAGTGGATAGAAGCGTTTTAAAAACTCTTCACG 838694
838695GTTCACTGCCGAGTAGGCAGCTTAGAAAAGTCTCGACGCCCAATCCTGCGCCAGCGCATT 838754
838755GTTCACTGCCGAGTAGGCAGCTTAGAAACGTTTGAAAGGCAATCTGCCGCCTAAATTCTT 838814
838815GTTCACTGCCGAGTAGGCAGCTTAGAAATGTTACTCAAAAATTGCTGGGGCTACAGTATC 838874
838875GTTCACTGCCGAGTAGGCAGCTTAGAAAGTAGCGAGCACACAGAAACTAGTGATAAGCGC 838934
838935GTTCACTGCCGAGTAGGCAGCTTAGAAACTGAGGACTATGTGGAGTCTCTTCGGGCCACC 838994
838995GTTCACTGCCGAGTAGGCAGCTTAGAAATGTTGGCGGATGAAGACTTGCCCGACGAGGCG 839054
839055GTTCACTGCCGAGTAGGCAGCTTAGAAAAATGCGTATGGCGTGAGCATGATTTCAGTAGA 839114
839115GTTCACTGCCGAGTAGGCAGCTTAGAAAGCGAACCAAAAAGAAATGTCCATCTTGCGGTA 839174
839175GTTCACTGCCGAGTAGGCAGCTTAGAAAGTAACCGCCAGGTGCCAGATACTTACGTAGCG 839234
839235GTTCACTGCCGAGTAGGCAGCTTAGAAAGCAACCCTGGAAAGAAGGGGAACCCAAAACTC 839294
839295GTTCACTGCCGAGTAGGCAGCTTAGAAATGAGTACTGCCAGTCTATTGTTGAATATTTCT 839354
839355GTTCACTGCCGAGTAGGCAGCTTAGAAAAAGGGGGCGCGCTTAGCTCTCGCTATCAACAC 839414
839415GTTCACTGCCGAGTAGGCAGCTTAGAAAGCCGCCGCCGGAAGTGATGCAGGGTATGCCGC 839474
839475GTTCACTGCCGAGTAGGCAGCTTAGAAAAAAAGAGGATGTGAAAGACAGGATAGGGCGCT 839534
839535GTTCACTGCCGAGTAGGCAGCTTAGAAACGAAGCGCTCAGCCGTGCGGAAGTTGACGGAA 839594
839595GTTCACTGCCGAGTAGGCAGCTTAGAAAATTGCTTCCACCGCCCAACATATTGTCCTCAG 839654
839655GTTCACTGCCGAGTAGGCAGCTTAGAAATGTCAGCGCCTTAAGGTATTGGTTAGCACCGT 839714
839715GTTCACTGCCGAGTAGGCAGCTTAGAAATAATTCCATGCCTCTCAAATGCTTCGATAGAT 839774
839775GTTCACTGCCGAGTAGGCAGCTTAGAAAGATCTGCTCGACATTCCAGCAGATGAAGTAAA 839834
839835GTTCACTGCCGAGTAGGCAGCTTAGAAAATCGCCAATGGATTTAAGCCCGGTGCCGTAGC 839894
839895GTTCACTGCCGAGTAGGCAGCTTAGAAAGTTGTGGTGGTCACCGGCTGGATCTCCATCAA 839954
839955GTTCACTGCCGAGTAGGCAGCTTAGAAATTATCGCGGTTTTCAGCAAGCCATTCATCGAT 840014
840015GTTCACTGCCGAGTAGGCAGCTTAGAAAACGACAGATGCGGCGGGGAACTGCTCGTCATC 840074
840075GTTCACTGCCGAGTAGGCAGCTTAGAAAGTAGCGAAGAACGCCTTCGAGCAATATCAGAA 840134
840135GTTCACTGCCGAGTAGGCAGCTTAGAAAGATTTATGTCAGGGTTTTGCAACACTCCAGCG 840194
840195GTTCACTGCCGAGTAGGCAGCTTAGAAAAGGCACGACCGCGACGCACGATAGCGTCAGCA 840254
840255GTTCACTGCCGAGTAGGCAGCTTAGAAAACCTGCTGAACTTTGTCAGGCTGGCTGGCTGT 840314
840315GTTCACTGCCGAGTAGGCAGCTTAGAGA840342
Left flanking sequence : Till position 836654 (length bp)
GAAAAATCAATAAGTTACCGACAGCCGAAAAAAAAGGGTCTGACAGCGAAAATCGACAATTGCAGGCTGA
AATACAACGGGTTAGAGTCAACGGGCTACA
Right flanking sequence : From position 840342 (length bp)
TGGTCGGTGCGTTGCGTGGTGCTGGGAGAGGGGGCACTACGTGCTGGTTGCGAAGAAATGGAATCGAGTG
GGATGGCGGATAGGGCGATGTTCACTACTG
Print the CRISPR sequence : From position bp To position bp