Institut de Génétique et Microbiologie

CRISPR details


Home About CRISPRs News FAQs Help Contact Us Examples IGM
Université Paris Sud

Navigation

Home page
CRISPRs database
Browse CRISPRs
BLAST CRISPRs
FlankAlign
CRISPRs utilities
My CRISPRs DB
CRISPRs finder
CRISPRs comparison

Other Tools

CRISPRcompar
CRISPRtionary
CRISPRfinder

GPMS Links

GPMS Team
Tandem Repeats DB
MLVA Web Service


NC_013156_2                                                                                                                 top


Strain : Methanocaldococcus fervens AG86 RefSeq :NC_013156 (chromosome circular)
CRISPR id : NC_013156_2
DR consensus (30 bp) : GTTAAAATCAGACCGGAACGGTATGGAAAGNumber of repetitions :8
Begin Position : 347389 End Position : 347890

347389GTTAAAATCAGACCGGAACGGTATGGAAAGATGTGTTCTTCACCGATTGCAATCAACAAGTCTG 347452
347453GTTAAAATCAGACCGGAACGGTATGGAAAGATCAACTCCACAATTTTTTCAATGGTTATGGTGCTA 347518
347519GTTAAAATCAGACCGGAACGGTATGGAAAGTTGTCATTTGCTATTTTATTAAGTGCAAGATAGTATG 347585
347586GTTAAAATCAGACCGGAACGGTATGGAAAGATATAGAGTTTTGAGAAGTTTCATGTTGCTCACATTTTAATGG 347658
347659GTTAAAATCAGACCGGAACGGTATGGAAAGCTCGCTCGCAAATCCTTAGATATTGCAAAAATCCCA 347724
347725GTTAAAATCAGACCGGAACGGTATGGAAAGTATTGAACATTCAAAAATAAAAGACACTTCTAAAGA 347790
347791GTTAAAATCAGACCGGAACGGTATGGAAATAATTGACTCTCTGTTACTTCTATTTTCAATATTTTGCCGT 347860
347861GTTAAAATAAGACAGTCTCGGTATGGAAAC347890
Left flanking sequence : Till position 347389 (length bp)
TATATAAATGAATGGGATTAAGTACCCTTCGACTTATAAGGTAGAGTAAAGTATATATATTAATAATGCT
AAAAATATGCTTATCTCGAATAATTGGTCT
Right flanking sequence : From position 347890 (length bp)
GCTATGCCAAAAAGAGACGAGAGTCCTGCCCAAATACACAATAGTCAAAAATAGGATTGATACTTAAAAA
TCTCGGGATTGGACGTTAGATTGGATTTGA
Print the CRISPR sequence : From position bp To position bp