Institut de Génétique et Microbiologie

CRISPR details


Home About CRISPRs News FAQs Help Contact Us Examples IGM
Université Paris Sud

Navigation

Home page
CRISPRs database
Browse CRISPRs
BLAST CRISPRs
FlankAlign
CRISPRs utilities
My CRISPRs DB
CRISPRs finder
CRISPRs comparison

Other Tools

CRISPRcompar
CRISPRtionary
CRISPRfinder

GPMS Links

GPMS Team
Tandem Repeats DB
MLVA Web Service


NC_013385_7                                                                                                                 top


Strain : Ammonifex degensii KC4 RefSeq :NC_013385 (chromosome circular)
CRISPR id : NC_013385_7
DR consensus (30 bp) : GTTTGTAGCCTACCTATGAGGGATTGAAACNumber of repetitions :30
Begin Position : 991878 End Position : 993835

991878GTTTGTAGCCTACCTATGAGGGATTGAAACCCGCCCATAGGGCCGGGGGTCTTCCCGGCGTTGATA 991943
991944GTTTGTAGCCTACCTATGAGGGATTGAAACAACATGCTACTTCTTCCCCCTTACCACCTTTCCAAT 992009
992010GTTTGTAGCCTACCTATGAGGGATTGAAACAAGTGCAACGCATTTCCCGCCGTCCAGGCCCCTGTA 992075
992076GTTTGTAGCCTACCTATGAGGGATTGAAACGCCATGAAGACGCGGTTCCTGTGCACCGCCACCAG 992140
992141GTTTGTAGCCTACCTATGAGGGATTGAAACGACATTCTGATGAGTCCTTCAGGGCGCGAGTAGACG 992206
992207GTTTGTAGCCTACCTATGAGGGATTGAAACCTCTTCCACTAGCCGCCATTCCATAGCGGCTAGTGC 992272
992273GTTTGTAGCCTACCTATGAGGGATTGAAACCGGCACAGCAGCGCTCCCCGCTTGACCCTGCGCCG 992337
992338GTTTGTAGCCTACCTATGAGGGATTGAAACCCTTCCACCCGCCGAAGACGAAGAGCGGCAGGCGCA 992403
992404GTTTGTAGCCTACCTATGAGGGATTGAAACATAAGGTTGCCGTTCGCATCCCTAATGGTAAGCAACA 992470
992471GTTTGTAGCCTACCTATGAGGGATTGAAACAGTATTCCGGCTATCGCCCCCGTACTGTCACCACCTC 992537
992538GTTTGTAGCCTACCTATGAGGGATTGAAACTTAGGCTAACGGAAAAGTTACCTTTCTTATCTAGTAT 992604
992605GTTTGTAGCCTACCTATGAGGGATTGAAACCTCTCTGCGCCGAGTGCGGCGCGAAGGTTGCGGTATG 992671
992672GTTTGTAGCCTACCTATGAGGGATTGAAACGCGGGGGAGGTCCCTTCCCCACCGCGGCGGCCAACCCG 992739
992740GTTTGTAGCCTACCTATGAGGGATTGAAACGCTCGGCCAGCTGCTCGACCAACTGGGGATCAAGTT 992805
992806GTTTGTAGCCTACCTATGAGGGATTGAAACACATCTGCACGGGCGGAGTTATGCGCGGCACCTTTGTC 992873
992874GTTTGTAGCCTACCTATGAGGGATTGAAACCCCGCAGCGACGACAGAGACGTGTCCCTCGAAGAGC 992939
992940GTTTGTAGCCTACCTATGAGGGATTGAAACCTTTTTTCGCTACCGTGCCGGCCTTTTGGCCATCTC 993005
993006GTTTGTAGCCTACCTATGAGGGATTGAAACTTCCCCCAGCCCCGCAGGTTCCAGAAGTGGGTGCGC 993071
993072GTTTGTAGCCTACCTATGAGGGATTGAAACCTGACCACGCTGATGGAAGTCTTCTGGGAGTGCTTCAG 993139
993140GTTTGTAGCCTACCTATGAGGGATTGAAACGCCACAGGAGCACAAGCCGTACTCTTTCGGAACAG 993204
993205GTTTGTAGCCTACCTATGAGGGATTGAAACAACGGGCCGGTCTCTCCGAGGGGTGGTTGATCGCG 993269
993270GTTTGTAGCCTACCTATGAGGGATTGAAACTCTTCCCGGGCGCGGCGCACCGGGTGGACGCGCTCCT 993336
993337GTTTGTAGCCTACCTATGAGGGATTGAAACAGATAGGCGACGGCGTGTTCCTGCGCCTGATGAAG 993401
993402GTTTGTAGCCTACCTATGAGGGATTGAAACAAGGGAGAAGGAGTTCCCGTTGCGCAGACAGGAGTGGG 993469
993470GTTTGTAGCCTACCTATGAGGGATTGAAACCCCTACTATTCCCACCACACCCACGACGTGACAGGCGC 993537
993538GTTTGTAGCCTACCTATGAGGGATTGAAACGTGTTCCCGGCAGGCTGCAGAAAGTGACGGGGTACG 993603
993604GTTTGTAGCCTACCTATGAGGGATTGAAACCGGGTGTAGTCCACGCCGTTGACCGTCTCGATCACGG 993670
993671GTTTGTAGCCTACCTATGAGGGATTGAAACGTAATGCTGGCATAAAGGCAGAGCAGGCGGGTACGACT 993738
993739GTTTGTAGCCTACCTATGAGGGATTGAAACACATCTCCTGGAGCCCTGTCCAGGGCGCGAGCTACTA 993805
993806GTTTGTAGCCTACCTATGAGGGATTGAAAC993835
Left flanking sequence : Till position 991878 (length bp)
CTAACTTAAAGACAACAGGAAATTTAAGGCTTCCGGCGAATGGTCGTCTGCGCTCCAGGCACCATACACC
CGGAAGCTAGATTTTATGCCCACAAAACGG
Right flanking sequence : From position 993835 (length bp)
GTTTTTCTGGAGGGGCGTAAGCTCAAACTGTTGCCCTACCTTCAGGTAGAAAGTAGGAAACTTACCCGCC
GTGTTCGGCGGGACGAAAGGAGGTGTCTGT
Print the CRISPR sequence : From position bp To position bp