Institut de Génétique et Microbiologie

CRISPR details


Home About CRISPRs News FAQs Help Contact Us Examples IGM
Université Paris Sud

Navigation

Home page
CRISPRs database
Browse CRISPRs
BLAST CRISPRs
FlankAlign
CRISPRs utilities
My CRISPRs DB
CRISPRs finder
CRISPRs comparison

Other Tools

CRISPRcompar
CRISPRtionary
CRISPRfinder

GPMS Links

GPMS Team
Tandem Repeats DB
MLVA Web Service


NC_013502_7                                                                                                                 top


Strain : Rhodothermus marinus DSM 4252 RefSeq :NC_013502 (plasmid pRMAR01 )
CRISPR id : NC_013502_7
DR consensus (36 bp) : CCTTCAATGCTGCCGTAGCTATTTAGCTACGGAAATNumber of repetitions :33
Begin Position : 119724 End Position : 122080

119724CCTTCAATGCTGCCGTAGCTATTTAGCTACGGAAATCGCCGTCGGCGGCGAGTTCGTTCAGAATGTCGGTAGTAA 119798
119799CCTTCAATGCTGCCGTAGCTATTTAGCTACGGAAATGGAGCACGGCGCCCAGACCCTGCACGCGCCAGCAC 119869
119870CCTTCAATGCTGCCGTAGCTATTTAGCTACGGAAATGCAGCGTGCCCTAAGGTTCTGTACACGCGAAGGCCT 119941
119942CCTTCAATGCTGCCGTAGCTATTTAGCTACGGAAATTTCAAGCGGAACGCCGTAGTGACGCCAGACCCACA 120012
120013CCTTCAATGCTGCCGTAGCTATTTAGCTACGGAAATCGGAGGACGTGCTGCGCCGGCGCCGCCTGCAACTGAGG 120086
120087CCTTCAATGCTGCCGTAGCTATTTAGCTACGGAAATGATCCGTGGAGGGATCCGGTTTATTCCATTTCCATC 120158
120159CCTTCAATGCTGCCGTAGCTATTTAGCTACGGAAATATGCGACATCGATCGGACGCTACGGCGTGCGCTACATG 120232
120233CCTTCAATGCTGCCGTAGCTATTTAGCTACGGAAATCCAGCTTGCTCAGAGTAGCGCTGAACTGGATCAGAT 120304
120305CCTTCAATGCTGCCGTAGCTATTTAGCTACGGAAATGCCGGGTGCGATCCGCTGGAGCGGATCGATGGCGCA 120376
120377CCTTCAATGCTGCCGTAGCTATTTAGCTACGGAAATCGAGGTGCCGCTGTCCGGCCTGCACGCAGTTTATAC 120448
120449CCTTCAATGCTGCCGTAGCTATTTAGCTACGGAAATCCGGTGCCGCCTCATATCGCCTTCAGACGCTGTCA 120519
120520CCTTCAATGCTGCCGTAGCTATTTAGCTACGGAAATCTTCGTGGCGCTTGATCAATTGTTTAGTCTTGTAGC 120591
120592CCTTCAATGCTGCCGTAGCTATTTAGCTACGGAAATTCAACTCCCGGATGAGGTCGAGATCCGCTGCTGG 120661
120662CCTTCAATGCTGCCGTAGCTATTTAGCTACGGAAATTTCAAGCGGAACGCCGTAGTGACGCCAGACCCACA 120732
120733CCTTCAATGCTGCCGTAGCTATTTAGCTACGGAAATGGTGCTGGCAGGAAATACTACCTGGGCACTGACGT 120803
120804CCTTCAATGCTGCCGTAGCTATTTAGCTACGGAAATGCCGTACTCGGCCCAGAGATCCGAAGGCGCCGGCTGCG 120877
120878CCTTCAATGCTGCCGTAGCTATTTAGCTACGGAAATTTTTCACCAGGCGCTGGACCGCGACGGATCCTTCG 120948
120949CCTTCAATGCTGCCGTAGCTATTTAGCTACGGAAATTTGTACAAGCGGTAGCGTCCCTGAACCAGACCCACAT 121021
121022CCTTCAATGCTGCCGTAGCTATTTAGCTACGGAAATCTTCTTCGTCGCATTCGATTCTGTATTGCGACAGTGAA 121095
121096CCTTCAATGCTGCCGTAGCTATTTAGCTACGGAAATCCGAAGTTTTTGAGCCGCTCAGCATACCGATTGTAAA 121168
121169CCTTCAATGCTGCCGTAGCTATTTAGCTACGGAAATGACGTGGTCGGTCGCGCTCTCGTAGAGCCACCTGAGAG 121242
121243CCTTCAATGCTGCCGTAGCTATTTAGCTACGGAAATCTCTCCGGCTTCTCCCTTTCCTGAGGCACAGGCTCAA 121315
121316CCTTCAATGCTGCCGTAGCTATTTAGCTACGGAAATCGAGCGTGGACGCGTTGGCTTTGAGCGCGTCCACGATA 121389
121390CCTTCAATGCTGCCGTAGCTATTTAGCTACGGAAATCACGCAAGCGTGTACTATTGGTCACGCGGAAGGCCTA 121462
121463CCTTCAATGCTGCCGTAGCTATTTAGCTACGGAAATAAGCGAGGGGGCGCTTAAAGGCGCCCCCTCGCTTGA 121534
121535CCTTCAATGCTGCCGTAGCTATTTAGCTACGGAAATAAGCGAGGGGGCGCTTAAAGGCGCCCCCTCGCTTGAG 121607
121608CCTTCAATGCTGCCGTAGCTATTTAGCTACGGAAATAGTCGAGCGGCGGCGGCTCCTCGGAGAAAGCTTT 121677
121678CCTTCAATGCTGCCGTAGCTATTTAGCTACGGAAATTCGACGACCACGGCGAAGTGCGCCAGAAGTCCGTTGGC 121751
121752CCTTCAATGCTGCCGTAGCTATTTAGCTACGGAAATCAGACCGCAGGCGCTGCTGGAGCTGGACGAGGAGAAGAA 121826
121827CCTTCAATGCTGCCGTAGCTATTTAGCTACGGAAATTAGCTGGCTCTGACAACGGCGCGTGTAGCCTGCAATCG 121900
121901CCTTCAATGCTGCCGTAGCTATTTAGCTACGGAAATCCCGCGAAAAAAGCGCCCTGAAAAGCCTTCTTTAA 121971
121972CCTTCAATGCTGCCGTAGCTATTTAGCTACGGAAATCTGCTCGGCGCGCGTCGCATCGCAAGACCGATTCCTG 122044
122045CCTTCAATGCTGCCGTAGCTATTTAGCTACGGAAAT122080
Left flanking sequence : Till position 119724 (length bp)
GGCTCCGAAAGGTGTTACAGGAAAATGGAAAATAATATATGTCCGAGTACTTAGCTACGGAAATTCTCAC
TCCGGGTGGACCGAGGTGACCGCGTACAGC
Right flanking sequence : From position 122080 (length bp)
AGCTACCATGGCCTCTGTGGCGGCATTTTTTGTCCATCCAGTACAATTCATTGCAAGTAACTTGATCACC
CCATTTTCATCAAGAACCTGAAAATAAAAG
Print the CRISPR sequence : From position bp To position bp