Institut de Génétique et Microbiologie

CRISPR details


Home About CRISPRs News FAQs Help Contact Us Examples IGM
Université Paris Sud

Navigation

Home page
CRISPRs database
Browse CRISPRs
BLAST CRISPRs
FlankAlign
CRISPRs utilities
My CRISPRs DB
CRISPRs finder
CRISPRs comparison

Other Tools

CRISPRcompar
CRISPRtionary
CRISPRfinder

GPMS Links

GPMS Team
Tandem Repeats DB
MLVA Web Service


NC_013893_1                                                                                                                 top


Strain : Staphylococcus lugdunensis HKU09-01 RefSeq :NC_013893 (chromosome circular)
CRISPR id : NC_013893_1
DR consensus (36 bp) : AATCAGAGAATACCCCGTATAAAAGGGGACGAGAACNumber of repetitions :7
Begin Position : 29464 End Position : 29929

29464AATCAGAGAATACCCCGTATAAAAGGGGACGAGAACTTCTGTATTTCTATTAACCAATTCATAAGTGTCATTA 29536
29537AATCAGAGAATACCCCGTATAAAAGGGGACGAGAACTTCATCATATCCTTTTATATAGTTTTTGTTTTGTT 29607
29608AATCAGAGAATACCCCGTATAAAAGGGGACGAGAACCCAGTTGCTATTTTATTTGTCAACCATTTTATTAA 29678
29679AATCAGAGAATACCCCGTATAAAAGGGGACGAGAACTAGAATGTTTAAACAAGGTGTTTCAAAACCTG 29746
29747AATCAGAGAATACCCCGTATAAAAGGGGACGAGAACAACATTTTATTTACGTCTGTTTTTGCCTCTACTAAGTAA 29821
29822AATCAGAGAATACCCCGTATAAAAGGGGACGAGAACTCGCTATTCAATAAGTTTTGTATTTGTTGTCTCATT 29893
29894AATCAGAGAATACCCCGTATAAAAGGGGACAAAAAG29929
Left flanking sequence : Till position 29464 (length bp)
TTTTGACAAATAAGGTATTACCTAGAGTTAGATTGTCAAAATTTTTGCCAATTTAAATTATCCTTCAAAC
TTAGGCAATACTGGATTGAAATTAATTGCT
Right flanking sequence : From position 29929 (length bp)
ATGTTAATATTAAGGTTTTTAAAAAACTAGATAATAACCAAAGCGCTAACTCTGCATTTGAGTCAGCGCA
GTTTGTTTTATTATTTAAAAAATTTAAATG
Print the CRISPR sequence : From position bp To position bp