Institut de Génétique et Microbiologie

CRISPR details


Home About CRISPRs News FAQs Help Contact Us Examples IGM
Université Paris Sud

Navigation

Home page
CRISPRs database
Browse CRISPRs
BLAST CRISPRs
FlankAlign
CRISPRs utilities
My CRISPRs DB
CRISPRs finder
CRISPRs comparison

Other Tools

CRISPRcompar
CRISPRtionary
CRISPRfinder

GPMS Links

GPMS Team
Tandem Repeats DB
MLVA Web Service


NC_013894_2                                                                                                                 top


Strain : Thermocrinis albus DSM 14484 RefSeq :NC_013894 (chromosome circular)
CRISPR id : NC_013894_2
DR consensus (29 bp) : CTTTCAACTCCACACGGTACATTAGAAACNumber of repetitions :41
Begin Position : 177442 End Position : 180135

177442TTTTCAACTCCACACGGTACGTTAGAAACTAGCTCTTGCAAGTTCAGATTTTCTTTGAAACTCAAA 177507
177508CTTTCAACTCCACACGGTACATTAGAAACACAGAGAGGTCTTAGTAAATTCTGGGCTGAACGTTAC 177573
177574CTTTCAACTCCACACGGTACATTAGAAACTCTCCCCGTAAAGCGGATACTTCATCTGTCAGAGCAT 177639
177640CTTTCAACTCCACACGGTACATTAGAAACTAGAAGATGATGAAAACTCGTTCCCTGTTGTCTCCC 177704
177705CTTTCAACTCCACACGGTACATTAGAAACCTGACTATAAAAACTTTTTCGTTGCTCAAATCATAA 177769
177770CTTTCAACTCCACACGGTACATTAGAAACACAGAGAGGTCTTAGTAAATTCTGGGCTGAACGTTAC 177835
177836CTTTCAACTCCACACGGTACATTAGAAACTCTCCCCGTAAAGCGGATACTTCATCTGTCAGAGCAT 177901
177902CTTTCAACTCCACACGGTACATTAGAAACCTCCACAGCTATGAAGCGTATGAGAAGTTAATGGATCTGAAG 177972
177973CTTTCAACTCCACACGGTACATTAGAAACCATGCGTGAGAGACTTATCTATGTAATTTATCCCCTCA 178039
178040CTTTCAACTCCACACGGTACATTAGAAACAAGAAAACACGTTCTCCAAAGCTCCCGCCACTTCCTG 178105
178106CTTTCAACTCCACACGGTACATTAGAAACGGGGCAGTTTAGGAGCTTCGGCGGGTTGGGTAGTTTG 178171
178172CTTTCAACTCCACACGGTACATTAGAAACAGCCTAAAAGTCAGATGATTGGCACGATGTTTGCTAT 178237
178238CTTTCAACTCCACACGGTACATTAGAAACACCCAGTGAAGGAAGTCCCCGTGTCAAAACTACTCCCAT 178305
178306CTTTCAACTCCACACGGTACATTAGAAACAATACTAGACAAGGATGAAATCCGTAAGGCACTAAAGCT 178373
178374CTTTCAACTCCACACGGTACATTAGAAACGGGGCAGTTTAGGAGCTTCGGCGGGTTGGGTAGTTTG 178439
178440CTTTCAACTCCACACGGTACATTAGAAACTTTAACTATGAGCCTGTCGCATATTTCCTTGAGCATC 178505
178506CTTTCAACTCCACACGGTACATTAGAAACTGTCCACAATCTTCACTATCTGCGTTGGAATCACCTT 178571
178572CTTTCAACTCCACACGGTACATTAGAAACCCGTACACCGCTACCCGTAGTTCCTTACCCCAATGAGA 178638
178639CTTTCAACTCCACACGGTACATTAGAAACAGGGACGTTTTTGTTGCGTGCGTGCGTGCGTGC 178700
178701CTTTCAACTCCACACGGTACATTAGAAACAAGGGCTTAATGCTATTAAATTCGGTCAAGGATAAAA 178766
178767CTTTCAACTCCACACGGTACATTAGAAACCCTTTTAGGGACATCCCTCATGCCTTCTATGTCAAGCCTATG 178837
178838CTTTCAACTCCACACGGTACATTAGAAACAGAAATACATGTACTGCTGTTATGACAGTGTGTTTGCA 178904
178905CTTTCAACTCCACACGGTACATTAGAAACCCATGATCACGGTGAGAGTTCTTGAAAAGAATAATGA 178970
178971CTTTCAACTCCACACGGTACATTAGAAACGTGAAGATAGATAGCCCCGATGAGGCTCTGGATGCTTT 179037
179038CTTTCAACTCCACACGGTACATTAGAAACGACAGGTTCAAACTCCCACGACCTCATGGCTAAATACTGT 179106
179107CTTTCAACTCCACACGGTACATTAGAAACAGTGGTCAGGGAGGAGTTTGACCCCAGACAACTGAGA 179172
179173CTTTCAACTCCACACGGTACATTAGAAACAGTGGTCAGGGAGGAGTTTGACCCCAGACAACTGAGA 179238
179239CTTTCAACTCCACACGGTACATTAGAAACTCTTGATAGTGTTCCAACTCCTTGCCCGCCTTGAGGAG 179305
179306CTTTCAACTCCACACGGTACATTAGAAACTGTAATCTTGTCAATGCTTTCTTGATAAGATTTGACA 179371
179372CTTTCAACTCCACACGGTACATTAGAAACTGCTTCCATAATGGTTATATGATTTTTACAATCAATAAC 179439
179440CTTTCAACTCCACACGGTACATTAGAAACAAACGTCAGGTCTTTCGCTCAGTTATCATTACATTTAC 179506
179507CTTTCAACTCCACACGGTACATTAGAAACACATCTACATAGTTCTTGCTGATTACATGCTTCCTTATTTTC 179577
179578CTTTCAACTCCACACGGTACATTAGAAACATTCCTCATAGAGGCTTTTCACCTCCTGAGGAATTTC 179643
179644CTTTCAACTCCACACGGTACATTAGAAACTGAATATGTGCCAGAAGACTCCGACGGCAAAAAACTC 179709
179710CTTTCAACTCCACACGGTACATTAGAAACTTTAGCCAGTCCTTGAATGGTAATGTTCTTAAATAG 179774
179775CTTTCAACTCCACACGGTACATTAGAAACAAGTATTAACTTCTTTAGCTTTTTGAGAGCAAGCTTG 179840
179841CTTTCAACTCCACACGGTACATTAGAAACGGTATGTTAATTGGAGGAATGGGTGGTGGCATGATGGG 179907
179908CTTTCAACTCCACACGGTACATTAGAAACCATCTTTTCTGCAAAAGACAGAGCAAGGGCATACATAGA 179975
179976CTTTCAACTCCACACGGTACATTAGAAACCGAGGTAAAAGAACTGCTTGTCATAAGAAAGATAATG 180041
180042CTTTCAACTCCACACGGTACATTAGAAACGATATCTTTTTCAAAACAGATGAGAAATACCAACAT 180106
180107CTTTCAACTCCACACGGTACATTAGAAAC180135
Left flanking sequence : Till position 177442 (length bp)
TTCTTAATGGAGGATCTGACGATAATCATTACAAGGCAGAGATAGAGAGGCCCCAGAGGATAATAGGCAA
ACAGACCATACAGATAGAGATATTAAAAAC
Right flanking sequence : From position 180135 (length bp)
CCTAACTCTTCATATTAATCTTATCCTACAGAATCAATAACTTTAGAGAGGGGGTACCCTTCGCAAAATG
AAGTTTATTTTCGGAAACTCCAGGTGTCTC
Print the CRISPR sequence : From position bp To position bp