Institut de Génétique et Microbiologie

CRISPR details


Home About CRISPRs News FAQs Help Contact Us Examples IGM
Université Paris Sud

Navigation

Home page
CRISPRs database
Browse CRISPRs
BLAST CRISPRs
FlankAlign
CRISPRs utilities
My CRISPRs DB
CRISPRs finder
CRISPRs comparison

Other Tools

CRISPRcompar
CRISPRtionary
CRISPRfinder

GPMS Links

GPMS Team
Tandem Repeats DB
MLVA Web Service


NC_013974_18                                                                                                                 top


Strain : Clostridium difficile BI9 RefSeq :NC_013974 (chromosome circular)
CRISPR id : NC_013974_18
DR consensus (29 bp) : ATTTACATACCACTTAGTTAATATAAAACNumber of repetitions :9
Begin Position : 3121923 End Position : 3122471

3121923ATTTACATACCACTTAGTTAATATAAAACGTTGTTAGATAAATCATATGCTTTAGTTGCTTTAG 3121986
3121987ATTTACATACCACTTAGTTAATATAAAACACTTCGAAATTGCAGTTTTCAGCATGTTATTGCGCA 3122051
3122052ATTTACATACCACTTAGTTAATATAAAACAAATTCGAGGTCTTGATTTTGAAGTTTTTGGTTATGC 3122117
3122118ATTTACATACCACTTAGTTAATATAAAACGGTTTCTACCAATCAAATCACGCATAATTATAGA 3122180
3122181ATTTACATACCACTTAGTTAATATAAAACAATCATTTTGTATGATTGTTCCATTTTTTTTGAAAAC 3122246
3122247ATTTACATACCACTTAGTTAATATAAAACCTCTGTGACTCCATATTTTTTTGCAATATATAATTC 3122311
3122312ATTTACATACCACTTAGTTAATATAAAACCATTTGTAAATCTTTATGATTATGTAATATATTCATA 3122377
3122378ATTTACATACCACTTAGTTAATATAAAACTTTTTGAATGTTGAAGATTTTGTTAATGCAGGGAAA 3122442
3122443ATTTACATACCACTTAGTTAATATAAAAC3122471
Left flanking sequence : Till position 3121923 (length bp)
AGTTTCTAAATACTCGTTGATATTGCTAATATTCTACTTATCTACCCTTAGTTGATATAAAACCTGACAC
TGTGCCTTGTGTGAGTCTTTTCTTTATCCT
Right flanking sequence : From position 3122471 (length bp)
CCCAAAATAGGTATAATTGAATACATTGAAAATACTTCAATCAAGCAATTATAATTCAATAAAAACATCA
AAATTTGCAGTGAGCGAGCAGTAGTGCAAT
Print the CRISPR sequence : From position bp To position bp