Institut de Génétique et Microbiologie

CRISPR details


Home About CRISPRs News FAQs Help Contact Us Examples IGM
Université Paris Sud

Navigation

Home page
CRISPRs database
Browse CRISPRs
BLAST CRISPRs
FlankAlign
CRISPRs utilities
My CRISPRs DB
CRISPRs finder
CRISPRs comparison

Other Tools

CRISPRcompar
CRISPRtionary
CRISPRfinder

GPMS Links

GPMS Team
Tandem Repeats DB
MLVA Web Service


NC_014147_2                                                                                                                 top


Strain : Moraxella catarrhalis RH4 RefSeq :NC_014147 (chromosome circular)
CRISPR id : NC_014147_2
DR consensus (28 bp) : TTTCTAAGCGACCTGTGCGGTCGTGAAGNumber of repetitions :49
Begin Position : 28086 End Position : 30997

28086TTGCTAAGCGACCTGTGCGGTCGTGAAGGACGGCAGTCCGTGCGTGAGATTTATGGCAAA 28145
28146TTTCTAAGCGACCTGTGCGGTCGTGAAGTCAAAAATACGATTGATGCGTTGAATGCTACG 28205
28206TTTCTAAGCGACCTGTGCGGTCGTGAAGAAGCTACTAGGGGAAGTTGATATTTTGAAACT 28265
28266TTTCTAAGCGACCTGTGCGGTCGTGAAGGTCCTACCCAAATGTAGGTCAGTAGCGTGTAA 28325
28326TTTCTAAGCGACCTGTGCGGTCGTGAAGCATTACCAATACCATAGCCTGTGAGTGTTGTA 28385
28386TTTCTAAGCGACCTGTGCGGTCGTGAAGAGTCCGCACGGCGATAAAAAGCCCATGTTTTC 28445
28446TTTCTAAGCGACCTGTGCGGTCGTGAAGATTTATGATAAGTAACATTGCCAACACCTTTA 28505
28506TTTCTAAGCGACCTGTGCGGTCGTGAAGATGTGCTAAAAACCCAATGGGCGGTCAGCTCT 28565
28566TTTCTAAGCGACCTGTGCGGTCGTGAAGGTTGCCGTGCTTGCTTTATTTGCAAGCTGTGC 28625
28626TTTCTAAGCGACCTGTGCGGTCGTGAAGAGTATTTTCTCGGCTATTGTTTTTGATTTACT 28685
28686TTTCTAAGCGACCTGTGCGGTCGTGAAGTGCCGCTGCTTGGCTTCGGTAATCAAAACAGC 28745
28746TTTCTAAGCGACCTGTGCGGTCGTGAAGAACGAAGAAAGAGTACCGACCCCTTTTGGTCG 28805
28806TTTCTAAGCGACCTGTGCGGTCGTGAAGCCGCCAAAAATGGTATTAAAGTGTGTGTGTAT 28865
28866TTTCTAAGCGACCTGTGCGGTCGTGAAGGTAAACAAGAATTTAATTTTTATCAAGACAAA 28925
28926TTTCTAAGCGACCTGTGCGGTCGTGAAGTTAAAGATTCCAAAGGGAATTTTGACATCAAG 28985
28986TTTCTAAGCGACCTGTGCGGTCGTGAAGTTGGCAAAGATTTATCAACCCACAGGCACTAT 29045
29046TTTCTAAGCGACCTGTGCGGTCGTGAAGATTGGCTGGCGTATTTCGTGCGATTAGCTATT 29105
29106TTTCTAAGCGACCTGTGCGGTCGTGAAGTTGTTGGCGTACCAAACAAAAGCATATTTGCA 29165
29166TTTCTAAGCGACCTGTGCGGTCGTGAAGCTTATCAGAAGTCCCAAGAGACTCAAGCACAG 29225
29226TTTCTAAGCGACCTGTGCGGTCGTGAAGTGGTGATTTATATACAGTAAGTAAGGGGGTCGG 29286
29287TTTCTAAGCGACCTGTGCGGTCGTGAAGATAGAGTTTCTGAAATAGATAATCAACCAAAA 29346
29347TTTCTAAGCGACCTGTGCGGTCGTGAAGTTTGCACAAAGGGGGTACAATTTTGCATGAAA 29406
29407TTTCTAAGCGACCTGTGCGGTCGTGAAGTACGCATTAACACAGTTGAAAGCTCTGTTAGC 29466
29467TTTCTAAGCGACCTGTGCGGTCGTGAAGCCGCTGGGGGCAGAAATCTTATTATAAATAGT 29526
29527TTTCTAAGCGACCTGTGCGGTCGTGAAGTTTGAAGTTTAATCAGCTCAAAAAGATTTGAC 29586
29587TTTCTAAGCGACCTGTGCGGTCGTGAAGTCTTTGCCCAAAGATGAGCGCGATAACAGCAT 29646
29647TTTCTAAGCGACCTGTGCGGTCGTGAAGAAATAATGCAGGTATTGTACAGCTATCTAATA 29706
29707TTTCTAAGCGACCTGTGCGGTCGTGAAGCATACCTGTTCACTCGGTGGGGTTGGGGAGCGG 29767
29768TTTCTAAGCGACCTGTGCGGTCGTGAAGTTTAGTCTTGGTTAACGCTTCCCATGCAACTG 29827
29828TTTCTAAGCGACCTGTGCGGTCGTGAAGGACGCATTAACACAGTTGAAAGCTCTGTTAGC 29887
29888TTTCTAAGCGACCTGTGCGGTCGTGAAGAGTTAATTGCTCTTGCTTTCTTGTCAAAGCTC 29947
29948TTTCTAAGCGACCTGTGCGGTCGTGAAGGATATTCGGAGCGGTAATTTGCGTATTTGCTC 30007
30008TTTCTAAGCGACCTGTGCGGTCGTGAAGTTAATATAAATTGCCCCAGTTGTGCTAACTGG 30067
30068TTTCTAAGCGACCTGTGCGGTCGTGAAGACGGTGACTTGATAGGCAGCGGTACGATATCA 30127
30128TTTCTAAGCGACCTGTGCGGTCGTGAAGAGCTTACGCCCACCAGCACCCCGCCAAATCAAG 30188
30189TTTCTAAGCGACCTGTGCGGTCGTGAAGGGATAAACCGCTCAAGCAGTTGGAAAAAAATA 30248
30249TTTCTAAGCGACCTGTGCGGTCGTGAAGGGCTGGATACAAGTGGTGGCAGGATGGGTATT 30308
30309TTTCTAAGCGACCTGTGCGGTCGTGAAGGCCAAGGGTTTCCCTGAGGGGCTGGCAGATAT 30368
30369TTTCTAAGCGACCTGTGCGGTCGTGAAGGAGCCACCTTGTCGCATTTCGCCATGAACGAT 30428
30429TTTCTAAGCGACCTGTGCGGTCGTGAAGAAAGATGATAACACAGCGATTTTAAACATAAC 30488
30489TTTCTAAGCGACCTGTGCGGTCGTGAAGAACCACCAATTTCTCGCTCACCGTAAAGTATG 30548
30549TTTCTAAGCGACCTGTGCGGTCGTGAAGTAAAGACACAAAGCGAGCATCTGGCTTGATTT 30608
30609TTTCTAAGCGACCTGTGCGGTCGTGAAGTTTCACAGACATATTTTTTGGTTTGTCCATGC 30668
30669TTTCTAAGCGACCTGTGCGGTCGTGAAGCGGCATTAACAATCAGCGTATGGACTGGTCAG 30728
30729TTTCTAAGCGACCTGTGCGGTCGTGAAGTGCCCATCAAAACCTTTCTTGATGAACACAAAG 30789
30790TTTCTAAGCGACCTGTGCGGTCGTGAAGAAAATCGGTACAGGATTGCCCTGAGCCACCGT 30849
30850TTTCTAAGCGACCTGTGCGGTCGTGAAGAAGTCAATACGGTGCGACCGCTGATAGCCTTG 30909
30910TTTCTAAGCGACCTGTGCGGTCGTGAAGTTTGGCGTGGTGAATTTGATTGGGTGAGCTAT 30969
30970TTTCTAAGCGACCTGTGCGGTCGTGAAG30997
Left flanking sequence : Till position 28086 (length bp)
TCGTGAAGAACAAGCCAAGCCACCCACTGCCCAAGTGGCGTTTCTACAAACCATACGCCAAATAATTACC
ATGATTCAGCCACCCACTGCCCAAGTGGCG
Right flanking sequence : From position 30997 (length bp)
AGTTAGTATAAACCAAAATAATAAGAAATAACAAGTCATTATGATAAAATTTGTCAAAAACCCAATCAAA
AATCTTCATGTTATAACTTATTGAAAATAT
Print the CRISPR sequence : From position bp To position bp