Institut de Génétique et Microbiologie

CRISPR details


Home About CRISPRs News FAQs Help Contact Us Examples IGM
Université Paris Sud

Navigation

Home page
CRISPRs database
Browse CRISPRs
BLAST CRISPRs
FlankAlign
CRISPRs utilities
My CRISPRs DB
CRISPRs finder
CRISPRs comparison

Other Tools

CRISPRcompar
CRISPRtionary
CRISPRfinder

GPMS Links

GPMS Team
Tandem Repeats DB
MLVA Web Service


NC_014228_5                                                                                                                 top


Strain : Xenorhabdus nematophila ATCC 19061 RefSeq :NC_014228 (chromosome circular)
CRISPR id : NC_014228_5
DR consensus (28 bp) : GAGGTCTCCGTAGGTACGGAGATAAACCNumber of repetitions :15
Begin Position : 3589391 End Position : 3590272

3589391GAGGTCTCCGTAGGTACGGAGATAAACCGAAAGTTTCAGCACCTATTAACGGAATTATTCT 3589451
3589452GAGGTCTCCGTAGGTACGGAGATAAACCGAGCAGCTATCAGCGGGTATGAGGCAGGCGAGA 3589512
3589513GAGGTCTCCGTAGGTACGGAGATAAACCGAATCCATTGTTGATAATGGCGCTGATTTCAAA 3589573
3589574GAGGTCTCCGTAGGTACGGAGATAAACCGTCGGCGATTTCTGCGGGGGTGGCACTCTATTG 3589634
3589635GAGGTCTCCGTAGGTACGGAGATAAACCCCGCGACAGAGCGATTACACTGAGGGAGGGGGC 3589695
3589696GAGGTCTCCGTAGGTACGGAGATAAACCGAATGACTCACCTCAGCTTTGCCATTACAGGTC 3589756
3589757GAGGTCTCCGTAGGTACGGAGATAAACCGTGGCCTGTGAAAGTGGATGCAGGAAAAACTAA 3589817
3589818GAGGTCTCCGTAGGTACGGAGATAAACCGAACATATTCAGAAAATGGCATGTCAATTATCA 3589878
3589879GAGGTCTCCGTAGGTACGGAGATAAACCGATTTTTCGCCTGTACGTCGTAAAACTGCTCAA 3589939
3589940GAGGTCTCCGTAGGTACGGAGATAAACCGGGATAGATCCTCGTAACTTGGATGACCCCACA 3590000
3590001GAGGTCTCCGTAGGTACGGAGATAAACCGGTAACGCAGACAAAAACCTACATCGACAAAGC 3590061
3590062GAGGTCTCCGTAGGTACGGAGATAAACCGCGTGACGATGTTATCTGAAAATATTAATGAAC 3590122
3590123GAGGTCTCCGTACCTACGGAGATAAACCGCCATATCTGGTTATCGAAGTCAATCTCATCCC 3590183
3590184GAGGTCTCCGTACCTACGGAGATAAACCGGATATTATCGACGCAGCGAATGATTTAACCGA 3590244
3590245GAGGTCTCCGTGGATACGGAGATAAACC3590272
Left flanking sequence : Till position 3589391 (length bp)
CACTTGCTGAGGAGTAGCTTAGAGAGATTAAAAACTACTTAAAGTCGGTAGAATTTATACCGGCAATAAA
GAAGATTAAAAACAATTGGTTATATTTAGG
Right flanking sequence : From position 3590272 (length bp)
GTGGTTTATGACACAACAAGATGAAGAAGATACGATTCCCCCGTAAATACGGGGAAATCCCCCTCAACTT
GTCACACAAAAAAGCATAAGCATAAGCATA
Print the CRISPR sequence : From position bp To position bp