Institut de Génétique et Microbiologie

CRISPR details


Home About CRISPRs News FAQs Help Contact Us Examples IGM
Université Paris Sud

Navigation

Home page
CRISPRs database
Browse CRISPRs
BLAST CRISPRs
FlankAlign
CRISPRs utilities
My CRISPRs DB
CRISPRs finder
CRISPRs comparison

Other Tools

CRISPRcompar
CRISPRtionary
CRISPRfinder

GPMS Links

GPMS Team
Tandem Repeats DB
MLVA Web Service


NC_014974_2                                                                                                                 top


Strain : Thermus scotoductus SA-01 RefSeq :NC_014974 (chromosome circular)
CRISPR id : NC_014974_2
DR consensus (29 bp) : CGGGCCATCCCCACGCGTGTGGGGACTACNumber of repetitions :37
Begin Position : 1182085 End Position : 1184314

1182085CGGGCCATCGCCGCCCGTATCGGGACTACGCTGGATTATTGAGCGTTAAGCGGTCCCAACT 1182145
1182146CGGGCCATCCCCACGCGTGTGGGGACTACACCACCCCTTCGCTTGCGAGTTGCGTCAGTTG 1182206
1182207CGGGCCATCCCCACGCGTGTGGGGACTACGTGGAGGAGCCCCAGGTCCCTCCCGACCCGAC 1182267
1182268CGGGCCATCCCCACGCGTGTGGGGACTACGCTGCCCTCCAGGGCTTGACCAGCTCCCCTAT 1182328
1182329CGGGCCATCCCCACGCGTGTGGGGACTACATCCGGTTGAACGCCTCCTGCATCTTTGCCTC 1182389
1182390CGGGCCATCCCCACGCGTGTGGGGACTACCGTGTCCCCGTGCCGGGCGGCGTCGGTCATGA 1182450
1182451CGGGCCATCCCCACGCGTGTGGGGACTACGGAGATGGCTCCCTGGACTGCCTTGGGGGTTAA 1182512
1182513CGGGCCATCCCCACGCGTGTGGGGACTACCCATTCGGCTACCTGCCCCTACGAGGCCGCAG 1182573
1182574CGGGCCATCCCCACGCGTGTGGGGACTACTAGCTCAAACCGCCACTGCCTTCTTCGGGTGG 1182634
1182635CGGGCCATCCCCACGCGTGTGGGGACTACGCTGCCCCTCAAGTCCTGGATGCCACCGCCGT 1182695
1182696AGGGCCATCCCCACGCGTGTGGGGACTACCTGGCGTCGTACCAGGCGAAAGCCTTGCGGTA 1182756
1182757CGGGCCATCCCCACGCGTGTGGGGACTACTCGTGGGCGTCCAGAATCCACCCGTCGCCCGT 1182817
1182818CGGGCCATCCCCACGCGTGTGGGGACTACTGTGAGTGACGATCAGTACGGCTGATCCCTGC 1182878
1182879CGGGCCATCCCCACGCGTGTGGGGACTACGGCAGGTATGCCCGACGGGTGGTAGGATCCCGC 1182940
1182941TGGGCCATCCCCACGCGTGTGGGGACTACATGCTCCGGGGGGTCGTAGATGACGATGCCAAA 1183002
1183003CGGGCCATCCCCACGCGTGTGGGGACTACGATAGACTAGGAGAGGGTAGATGAACTGGTAC 1183063
1183064CGGGCCATCCCCACGCGTGTGGGGACTACTGGACCTCCACGGTGTAGCTGGGCACCGTGGC 1183124
1183125CGGGCCATCCCCACGCGTGTGGGGACTACGGACCGGCCTCCCACGCCCCGTGGAGGTAACG 1183185
1183186CGGGCCATCCCCACGCGTGTGGGGACTACGGCTCCGGCATTGGGGCCGCCGGGGAGAACGA 1183246
1183247AGGGCCATCCCCACGCGTGTGGGGACTACGATAAGCCCCGGGCGGCCGAGGGACACATTCTC 1183308
1183309CGGGCCATCCCCACGCGTGTGGGGACTACCTACACCAGTTTACCGAGTGCGGGTGTGGGAT 1183369
1183370CGGGCCATCCCCACGCGTGTGGGGACTACGGTTGCGGGCCGCTTCCTCGGCGATGCGGGCGG 1183431
1183432CGGGCCATCCCCACGCGTGTGGGGACTACCAGGACGTGGCCGAGGGTGTCCCCCACCTGGA 1183492
1183493CGGGCCATCCCCACGCGTGTGGGGACTACTCCCCGGTCGCCATTTCCCACAGGACGGCCTC 1183553
1183554TGGGCCATCCCCACGCGTGTGGGGACTACCAGAGGTCTGCAGTCTCGTTCACCCGACGCAC 1183614
1183615CGGGCCATCCCCACGCGTGTGGGGACTACGGACGCCCGCCCAGAGAAGACGCTCCACCTCGT 1183676
1183677CGGGCCATCCCCACGCGTGTGGGGACTACGCCTCGTCTTCCACGCCCGGTGGCAGGGAGACC 1183738
1183739CGGGCCATCCCCACGCGTGTGGGGACTACTGCGTTCCGCCATCTCAGCGTAAAACGGAACA 1183799
1183800AGGGCCATCCCCACGCGTGTGGGGACTACGTAGCCCGGGGATGGTCAGGGGTTATCCCCGT 1183860
1183861CGGGCCATCCCCACGCGTGTGGGGACTACGCCGGAGCATGGTCTACCTCCGAGAGCGCTT 1183920
1183921CGGGCCATCCCCACGCGTGTGGGGACTACGAGCTTCCGCCGGCGGAGCCTCCCGTGATCC 1183980
1183981CGGGCCATCCCCACGCGTGTGGGGACTACGGGCTCGGGCCGAGCTGGGGCGGCGGTTTCCG 1184041
1184042CGGGCCATCCCCACGCGTGTGGGGACTACGCGTGCCCCACCAGCCGGGGGATGTGGGTGAG 1184102
1184103CGGGCCATCCCCACGCGTGTGGGGACTACTGATATCCACCCTCAAACTCTCCACATCGCCA 1184163
1184164CGGGCCATCCCCACGCGTGTGGGGACTACCCGTAATCCCAGAGTGGCTGAGCAAAAACTTG 1184224
1184225CGGGCCATCCCCACGCGTGTGGGGACTACTCAATGTAGTTCCGCTCGATCACCTCCCTTCT 1184285
1184286CGGGCCATCCCCACGCGTGTGGGGACTAC1184314
Left flanking sequence : Till position 1182085 (length bp)
CGGTGGGGAGGGCTCCTTGACAGGGCCGTTACCTCAAGGCCCTCGAGAAGCTACTTGCCCTCTAGCGCTT
GCGCAAAAGCCTTTTCACTGCTCCCCTTAC
Right flanking sequence : From position 1184314 (length bp)
ACATGATCCAGACGGCAAAAACCCCCGCTGACCCCCCTCTATGTGTATATAAAGGGAGCCAGTCTAAGGA
TTAACTGTCAAGATCCCCGCGTGCGAACCG
Print the CRISPR sequence : From position bp To position bp