Institut de Génétique et Microbiologie

CRISPR details


Home About CRISPRs News FAQs Help Contact Us Examples IGM
Université Paris Sud

Navigation

Home page
CRISPRs database
Browse CRISPRs
BLAST CRISPRs
FlankAlign
CRISPRs utilities
My CRISPRs DB
CRISPRs finder
CRISPRs comparison

Other Tools

CRISPRcompar
CRISPRtionary
CRISPRfinder

GPMS Links

GPMS Team
Tandem Repeats DB
MLVA Web Service


NC_015138_1                                                                                                                 top


Strain : Acidovorax avenae subsp. avenae ATCC 19860 RefSeq :NC_015138 (chromosome circular)
CRISPR id : NC_015138_1
DR consensus (36 bp) : AGTCTAGATCACTGGGATATGCGCACTGGCCGGAACNumber of repetitions :48
Begin Position : 300343 End Position : 303481

300343AGTCTAGATCACTGGGATATGCGCACTGGCCGGAACTGAGGCAGCACGCGATTTCCGCCAGCAGGT 300408
300409AGTCTAGATCACTGGGATATGCGCACTGGCCGGAACGCTGGCAAAGTGGACCATGCTCCAACATGT 300474
300475AGTCTAGATCACTGGGATATGCGCACTGGCCGGAACCCAAGGTCACCGTGGCTGTCATGTCGCTGG 300540
300541AGTCTAGATCACTGGGATATGCGCACTGGCCGGAACTGCCGGTGGTCTATCGAGCGTAACGGCGCG 300606
300607AGTCTAGATCACTGGGATATGCGCACTGGCCGGAACTCGGATGCTCGCGTGCATCCATCGGCGATT 300672
300673AGTCTAGATCACTGGGATATGCGCACTGGCCGGAACGAAATGGCTGCAAAAGCCTTGGCAGTGGGC 300738
300739AGTCTAGATCACTGGGATATGCGCACTGGCCGGAACAGGATTGACCACACGATCAACCACAGCGCGC 300805
300806AGTCTAGATCACTGGGATATGCGCACTGGCCGGAACTCGTCGGTACCGGCGGATGCGGTTCCTGCG 300871
300872AGTCTAGATCACTGGGATATGCGCACTGGCCGGAACGGCCTGGTCCAGCACCCAGGCGCCGATCGC 300937
300938AGTCTAGATCACTGGGATATGCGCACTGGCCGGAACACTCGCGCGGCGGAGGCGTACACCACCGGC 301003
301004AGTCTAGATCACTGGGATATGCGCACTGGCCGGAACACGAACTGGGTTTCAACGCCGCGAGTACCG 301069
301070AGTCTAGATCACTGGGATATGCGCACTGGCCGGAACGCCGACCGCCACGCCTTGTCGCGCCGACCA 301135
301136AGTCTAGATCACTGGGATATGCGCACTGGCCGGAACAAGACTGGTGACATAGTTCAGTTCTTTTGC 301201
301202AGTCTAGATCACTGGGATATGCGCACTGGCCGGAACTGTGGCCGGGTGGTCACGCGGGCGGATCTG 301267
301268AGTCTAGATCACTGGGATATGCGCACTGGCCGGAACCTGCTGGTCTGCATGTCCGATGCAAATCCA 301333
301334AGTCTAGATCACTGGGATATGCGCACTGGCCGGAACATGGCGGTGATCGTCTCCAGCGTCTGCTTG 301399
301400AGTCTAGATCACTGGGATATGCGCACTGGCCGGAACTTCCCGAAAACTTCCTGAATGGTCTGCGAA 301465
301466AGTCTAGATCACTGGGATATGCGCACTGGCCGGAACGCCCGTGGCCGCCACCCGCCGGTACACCTC 301531
301532AGTCTAGATCACTGGGATATGCGCACTGGCCGGAACTCCAGCGTCGGCGGTCAAACGATGCATCAC 301597
301598AGTCTAGATCACTGGGATATGCGCACTGGCCGGAACCTCATCGTAGAAGGGGATCACAAGCCGGGC 301663
301664AGTCTAGATCACTGGGATATGCGCACTGGCCGGAACTGGCTCAGCAACCATTCCTTAACTCTCATG 301729
301730AGTCTAGATCACTGGGATATGCGCACTGGCCGGAACTGCAGTGTCGTCAGGTCTATGACCTGAGCC 301795
301796AGTCTAGATCACTGGGATATGCGCACTGGCCGGAACAGGATCACTATTTTTCCAAGGCATGGCGCG 301861
301862AGTCTAGATCACTGGGATATGCGCACTGGCCGGAACGCCCCGCATAGAGACTTGCGTAATTTGCGC 301927
301928AGTCTAGATCACTGGGATATGCGCACTGGCCGGAACGTCGGGATGCACGTTTTGCAGCACGCCCGAC 301994
301995AGTCTAGATCACTGGGATATGCGCACTGGCCGGAACTGCAGTGCCAATTGGAGTGCGTGTGCTGCG 302060
302061AGTCTAGATCACTGGGATATGCGCACTGGCCGGAACGCAATCGCCAGCTTCGTTGCCACCGCCGAG 302126
302127AGTCTAGATCACTGGGATATGCGCACTGGCCGGAACAGGTCGGGCAGGCCATCGGCCAAGACCTGA 302192
302193AGTCTAGATCACTGGGATATGCGCACTGGCCGGAACAGCATGGTTCTGGCTGTGGCGGCCTGCGCT 302258
302259AGTCTAGATCACTGGGATATGCGCACTGGCCGGAACCCCGCGCCACGGCGATGCAGTACCGCGAAA 302324
302325AGTCTAGATCACTGGGATATGCGCACTGGCCGGAACACCCTGGCAATCGCCGCACTGATCGGCGCT 302390
302391AGTCTAGATCACTGGGATATGCGCACTGGCCGGAACATTGCGCGCATGCTCGTCGCTGATCATCGG 302456
302457AGTCTAGATCACTGGGATATGCGCACTGGCCGGAACAAGAGGGATGCGGCTATTGGTTTATTGACA 302522
302523AGTCTAGATCACTGGGATATGCGCACTGGCCGGAACCGAAACGGTTGCCACAGACGCAAGTTTCTT 302588
302589AGTCTAGATCACTGGGATATGCGCACTGGCCGGAACTGCGACCTGTTCCAAGGGCATCAACATGCT 302654
302655AGTCTAGATCACTGGGATATGCGCACTGGCCGGAACTGCATTTCTCATACTCCTGTTGCGCCGCGT 302720
302721AGTCTAGATCACTGGGATATGCGCACTGGCCGGAACCTAATTTGCGCCTGTCGATCCGAAGCCGC 302785
302786AGTCTAGATCACTGGGATATGCGCACTGGCCGGAACTCACCAGCGTGCAGGCCGCGGACCGCGCCG 302851
302852AGTCTAGATCACTGGGATATGCGCACTGGCCGGAACCCGGCAGATCGGATACGCCCACGGCGGGGT 302917
302918AGTCTAGATCACTGGGATATGCGCACTGGCCGGAACAAAGGCCGTAGGCCGAGCTGCAGGAAGTTG 302983
302984AGTCTAGATCACTGGGATAGGCGCACTGGCCGGAACCGTCACGCCCTGCCGGTGTAGCGCGCCCGA 303049
303050AGTCTAGATCACTGGGATATGCGCACTGGCCGGAACCCGGGCGGCGGCCGACCCCGGGCGCTTCG 303114
303115AGTCTAGATCACTGGGATATGCGCACTGGCCGGAACCCTGGTGCTGGCCGCATCGGGCGCATTGCC 303180
303181AGTCTAGATCACTGGGATATGCGCACTGGCCGGAACGCACGCATGCGGCAATGCGACAGACAGCAT 303246
303247AGTCTAGATCACTGGGATATGCGCACTGGCCGGAACTCGAGTACGTGAAGGAAACCGGCTTCACGA 303312
303313AGTCTAGATCACTGGGATATGCGCACTGGCCGGAACCGGGGGTGTCGGGCTGCTTGTCGTGGGTGA 303378
303379AGTCTAGATCACTGGGATATGCGCACTGGCCGGAACTGGTGGCACGGACCGCGCCCCGACTGGTCC 303444
303445AGTCTAGATCACTGGGATATGCGCACTGGCCGGAAC303480
Left flanking sequence : Till position 300343 (length bp)
AAGCACCCGATCAGTTCGATCTTTTCTAGCCAGACGCCATGTTTTCCTGGACCGCAGAAGCGAAAAACCC
CTTGACGAATCAAGGGGTTATCGCGATCAG
Right flanking sequence : From position 303481 (length bp)
GATACGCATTGGATGCCGGCAAGATACAGAGTCTAGAGCGTGTTATGAACTTCCCGCCGCAGCCAGCACC
CGCGCGGCGGCGGGCAACATGAGCACCGCA
Print the CRISPR sequence : From position bp To position bp