Institut de Génétique et Microbiologie

CRISPR details


Home About CRISPRs News FAQs Help Contact Us Examples IGM
Université Paris Sud

Navigation

Home page
CRISPRs database
Browse CRISPRs
BLAST CRISPRs
FlankAlign
CRISPRs utilities
My CRISPRs DB
CRISPRs finder
CRISPRs comparison

Other Tools

CRISPRcompar
CRISPRtionary
CRISPRfinder

GPMS Links

GPMS Team
Tandem Repeats DB
MLVA Web Service


NC_017167_5                                                                                                                 top


Strain : Alicyclobacillus acidocaldarius subsp. acidocaldarius Tc-4-1 RefSeq :NC_017167 (chromosome circular)
CRISPR id : NC_017167_5
DR consensus (37 bp) : GTTGATCCGCCGAGATCGTCGGCGGCCCCATTGAAGGNumber of repetitions :19
Begin Position : 3039367 End Position : 3040720

3039367GTTGATCCGCCGAGATCGTCGGCGGCCCCATTGAAGGCTTTTCGCCCAAAGGTCAGCACCTAACCTTCGTCC 3039438
3039439GTTGATCCGCCGAGATCGTCGGCGGCCCCATTGAAGGTTTATTCACCTGGCCCCGGCTCGTTTGAGAATGAGA 3039511
3039512GTTGATCCGCCGAGATCGTCGGCGGCCCCATTGAAGGCCGAGAATGGCGCGCGTGTGATGAAGGCCGTCTTCACGG 3039587
3039588GTTGATCCGCCGAGATCGTCGGCGGCCCCATTGAAGGCTCCTTCGCATCCAAAGACAAGATTGATGGCTGGCA 3039660
3039661GTTGATCCGCCGAGATCGTCGGCGGCCCCATTGAAGGACCCGACAATGCGAAATGTGTGCGATGGTATGGCAC 3039733
3039734GTTGATCCGCCGAGATCGTCGGCGGCCCCATTGAAGGGCCAAGATCGTGCACAAGAGCGGCAAACCGTATCAT 3039806
3039807GTTGATCCGCCGAGATCGTCGGCGGCCCCATTGAAGGAATGTGCACGTCGCGCTCGTCGTCACCAGCGAGTTCG 3039880
3039881GTTGATCCGCCGAGATCGTCGGCGGCCCCATTGAAGGGGCGCCGCGGCCATGGGGCTTGCCATGGGCTCGAA 3039952
3039953GTTGATCCGCCGAGATCGTCGGCGGCCCCATTGAAGGACATCGGATGCAAGCAGGCCCTCAAGGCCGCCGT 3040023
3040024GTTGATCCGCCGAGATCGTCGGCGGCCCCATTGAAGGAGATAGAAGGCCTTCGAGTTCCCCCCCCTGGATGTC 3040096
3040097GTTGATCCGCCGAGATCGTCGGCGGCCCCATTGAAGGACATAGAGTGCTGGACGATCTGGATGATGCACTTGA 3040169
3040170GTTGATCCGCCGAGATCGTCGGCGGCCCCATTGAAGCTCCTCCCCGGTGGCCGCGAAAACCGCACGACAGCC 3040241
3040242GTTGATCCGCCGAGATCGTCGGCGGCCCCATTGAAGCAGGCATTCGTGCCATAACAGTACCCGTTCCTCACGCA 3040315
3040316GTTGATCCGCCGACATCGTCGGCGGCCCCATTGAAGCTACGGATCGTCCTGCTCCGGCATCACACCGTACTTG 3040388
3040389GTTGATCCGCCGAGATCGTCGGCGGCCCCATTGAAGCGGGAATTGCTCCAGGAGAGCCCGGATCTCCTGTGCGCAG 3040464
3040465GTTGATCCGCCGAGATCGTCGGCGGCCCCATTGAAGCCGAGTGATGGGGGCGAAGTCGAACTCTCCGTTTTCCA 3040538
3040539GTTGATCCGCCGAGATCGTCGGCGGCCCCATTGAAGCAGTACCTCCTGCGCCTCCAGCACCACCATTTCCAC 3040610
3040611GTTGATCCGCCGAGATCGTCGTTGGCCTCATTGAAGCCCGAAACCTACTTCCGATGTTTGTGCCGCCTGGCGC 3040683
3040684GTTGATCCGCCAAGACAGTCGCCGCCCGGGCTAGACG3040720
Left flanking sequence : Till position 3039367 (length bp)
TAAAATGAGCGAGTGATGAGGTGCCGGATGGAGCGCCTTTATGAGAGGTTCGCGTTTTTCGCCCGGGAAG
CCGCGCCAGAAGCGGGCTCGGGAGGATGGA
Right flanking sequence : From position 3040720 (length bp)
CCCCCCTCTGAGCGTCCTCCGTCCCAAATAGAAAGGCCACCGCCAGTCTTCCGCGCCTTCACGGACAAAC
CGCCGATGGCCTTCGTAGTATTTGGAGATC
Print the CRISPR sequence : From position bp To position bp