Institut de Génétique et Microbiologie

CRISPR details


Home About CRISPRs News FAQs Help Contact Us Examples IGM
Université Paris Sud

Navigation

Home page
CRISPRs database
Browse CRISPRs
BLAST CRISPRs
FlankAlign
CRISPRs utilities
My CRISPRs DB
CRISPRs finder
CRISPRs comparison

Other Tools

CRISPRcompar
CRISPRtionary
CRISPRfinder

GPMS Links

GPMS Team
Tandem Repeats DB
MLVA Web Service


NC_017275_1                                                                                                                 top


Strain : Sulfolobus islandicus HVE10/4 RefSeq :NC_017275 (chromosome circular)
CRISPR id : NC_017275_1
DR consensus (24 bp) : CTTTCAATTCTATAGTAGATTAGCNumber of repetitions :101
Begin Position : 355291 End Position : 361826

355291CTTTCAATTCTATAGTAGATTAGCTGAGGGCAAAAATTCTTAGAGATGTTATCGACGACTTGGCG 355355
355356CTTTCAATTCTATAGTAGATTAGCCACTTTCTTTCGCCTCGTCAAGTATAGGTGAAACATCAGA 355419
355420CTTTCAATTCTATAGTAGATTAGCTACGCAGAATCCTGAGCAAATAGGTATCGCCGCCCTCGT 355482
355483CTTTCAATTCTATAGTAGATTAGCCTTACGAATTGCGTTTGTGTTAGTGTGCCTGATACAACAG 355546
355547CTTTCAATTCTATAGTAGATTAGCCCGCGTTTACCGCGAATACCGCGATCTCCCCCGGATTCTGTTAA 355614
355615CTTTCAATTCTATAGTAGATTAGCAGACTGAGTGAAATTCTGAAAGTGTTGAAGGAACCGGAAA 355678
355679CTTTCAATTCTATAGTAGATTAGCTGAGGCTGATGAGTCTAGATTTAGAACTGGATATATTCAATG 355744
355745CTTTCAATTCTATAGTAGATTAGCCATTACCACAGCCTGGTGGAACTTTACCAGGTTCACTTTA 355808
355809CTTTCAATTCTATAGTAGATTAGCTCGTCAGCCTCTGCCGAATTATGTTTCATATACCATGTTTTT 355874
355875CTTTCAATTCTATAGCAGATTAGCGTATTTTTATATTAGAAAATATGTAAAAAGACTACATGTTCT 355940
355941CTTTCAATTCTATAGTAGATTAGCCTAAAGAAGTGGCAATCACAACAAAGGATGGTAAAAGCATTA 356006
356007CTTTCAATTCTATAGTAGATTAGCTTTCACTACTGTAATGTTGTGAGTTTCATGTCTTATCAT 356069
356070CTTTCAATTCTATAGTAGATTAGCCTTATACCCAAATGTCACATAGATTTGCTAAACCGATAG 356132
356133CTTTCAATTCTATAGTAGATTAGCCTTTCGTTGATCATTATCTCATCAACAACATAATCATCCCTCACA 356201
356202CTTTCAATTCTATAGTAGATTAGCGTTACGTTATAGAAACAAGCAGAACTAACAGAAGTATAT 356264
356265CTTTCAATTCTATAGTAGATTAGCGTCAACTCTCCTAACTCCAATTGAGGAGTGGAATGAGATCTCAT 356332
356333CTTTCAATTCTATAGTAGATTAGCCTATGACAAACACGAAACCTATCATGAACAGCGGTGCAAA 356396
356397CTTTCAATTCTATAGTAGATTAGCCCGATTTCTTGGCGTCTGATTCTGATTCGGGCAATATG 356458
356459CTTTCAATTCTATAGTAGATTAGCAAAAAAACATATTCCGTTATCCCCACGCCTCTACCACCACC 356523
356524CTTTCAATTCTATAGTAGATTAGCGTTGTTGATTATAATTATAGCTGTCGCAGTGACAGCAGA 356586
356587CTTTCAATTCTATAGTAGATTAGCCTATCCATAGATCGCCCCTATTAGTCAACACGTTGTTGTG 356650
356651CTTTCAATTCTATAGTAGATTAGCTACTTGTATAACAATAGAGGCAATTATCGCTATGGCATGG 356714
356715GCTTCAATTCTATAGTAGATTAGCCGTTAGGAGCGCTAGGTGGTGGACTTTTCGGGATAGCGC 356777
356778CTTTCAATTCTATAGTAGATTAGCCTAAAATATCATGGATATCGATAGATAATGAAAAGTATATAAC 356844
356845CTTTCAATTCTATAGTAGATTAGCTCGGAATCGTGCCAAGTTAATCAACAACCAGATGGTCACA 356908
356909CTTTCAATTCTATAGTAGATTAGCCCGTGCCATTTGGAGCTCCCACCTAAAAATGTGTAAAAT 356971
356972CTTTCAATTCTATAGTAGATTAGCTAAAAATTAAGCAAGCATTACGTGACGCCGTAAGAGAGA 357034
357035CTTTCAATTCTATAGTAGATTAGCACCAAGATGAAGATAAAAAGAACTATTATCGTTTTGACGT 357098
357099CTTTCAATTCTATAGTAGATTAGCATTAATTTATTGACAGTCTATCTTATAAATAATCATGAAAA 357163
357164CTTTCAATTCTATAGTAGATTAGCCTTCAACAACAGCAAATGCAGGTCTAACAACTTCAGATGT 357227
357228CTTTCAATTCTATAGTAGATTAGCCTAATTCTGGTTCAAGCAACATCACTATAATAATAAA 357288
357289CTTTCAATTCTATAGTAGATTAGCCGGTGCTGCATGCAGCATTATCCGCTCACCCTAGTATTAT 357352
357353CTTTCAATTCTATAGTAGATTAGCGTTACTCTTTTGATATTTCTCATTTTTTCAATTTTTATTAC 357417
357418CTTTCAATTCTATAGTAGATTAGCTGAATGACCTTATAAGACTGATGAGACGAGCTTATGAAGAGAA 357484
357485CTTTCAATTCTATAGTAGATTAGCCTGTCGACTTCTACCAAATTGAAGGTAAAACAATATATTATATA 357552
357553CTTTCAATTCTATAGTAGATTAGCCCATTCTGTTAAGTGGCACTATGCCTTCCGCCGATTATCTTAGGA 357621
357622CTTTCAATTCTATAGTAGATTAGCCCAGCAAATGGCTCAAGTATTACCAGCGTTAGGTGTAACAGA 357687
357688CTTTCAATTCTATAGTAGATTAGCCCCGTCGCTATCTTCTACAGTCTCTTGTGTTAAGTAT 357748
357749CTTTCAATTCTATAGTAGATTAGCTTAGGTAGGTACTCATTTACCCATAAATTATATTGTAGTAT 357813
357814CTTTCAATTCTATAGTAGATTAGCTTGTCGACTACTGAAGATAAGGATATCTCTATATGAAT 357875
357876CTTTCAATTCTATAGTAGATTAGCTCAAAGTTTACGCGAATAGACCCGGACACCGTGGTATCATAACAA 357944
357945CTTTCAATTCTATAGTAGATTAGCGAAGCTGAGGCATTAGAAGCAGAAAGAAGGGGAAGAGTATGAC 358011
358012TTTTCAATTCTATAGTAGATTAGCACAGGGAATTCGCAATACTCTAGTACGTACACACAAATAGCTAAC 358080
358081CTTTCAATTCTATAGTAGATTAGCGGAGCTGCTTCTAAATTATTTATAGCGAAATCTATATGTACGG 358147
358148CTTTCAATTCTATAGTAGATTAGCTCAAATGGTCTAATTTTTGATGAAATTCAAACTTGGAAAGA 358212
358213CTTTCAATTCTATAGTAGATTAGCCTTTGGGGATCCGTTACATTAATCCCACCGTTTAGTATCT 358276
358277CTTTCAATTCTATAGTAGATTAGCACTACTATCCCTTCTACTCTACAAGAAGGGGTTGAGAGATG 358341
358342CTTTCAATTCTATAGTAGATTAGCGTTAGGGCATGTTCATCAATGTTTGGGCATGAAAATGTAATAA 358408
358409CTTTCAATTCTATAGTAGATTAGCGAGAAGGAGCGGAAATATTTACGCGAATTGTGGAATGAGG 358472
358473CTTTCAATTCTATAGTAGATTAGCAGGATCATCCCGTTCCTTCTGGTGACGGTGGTCTATAAGTTTAA 358540
358541CTTTCAATTCTATAGTAGATTAGCGAATTCCATGTCTTGCTAATTGTACATGATAATTTACAATTTT 358607
358608CTTTCAATTCTATAGTAGATTAGCCGAGTGAATCTATAACGGGTAGTGGAAACACATTAGTAAACG 358673
358674CTTTCAATTCTATAGTAGATTAGCTACCAAACACCTCCCTAACCTGACTCTTTGTCAACGTCAG 358737
358738CTTTCAATTCTATAGTAGATTAGCTCTGCATTTTTCACGATTTCACGTAAATCTTTTCCATCTA 358801
358802CTTTCAATTCTATAGTAGATTAGCTTCAATTATTGCTTCACCATAACTGCCATCATCACTAGT 358864
358865CTTTCAATTCTATAGTAGATTAGCTTTATCGAAAGATTTAAATATCTAATTTGCGTACAAGATAAT 358930
358931CTTTCAATTCTATAGTAGATTAGCAAAAATATAACGACAGATTGACGGAAATCGAGAAAGACCCGTT 358997
358998CTTTCAATTCTATAGTAGATTAGCTTGAGAAAAAAGGGATAATCAAGAGTGAGGGGGATGGAACA 359062
359063CTTTCAATTCTATAGTAGATTAGCACCGGTTCTTCTTCATGTAAGTATCTATAGCGTTAGTCTG 359126
359127CTTTCAATTCTATAGTAGATTAGCATCAAGAGACCAAGAAAATACTAGACAGTCTTTACGATAAG 359191
359192CTTTCAATTCTATAGTAGATTAGCAATGCAGTGGCGGAATCTAAGGATTATTCAATAGATGATA 359255
359256CTTTCAATTCTATAGTAGATTAGCATAGAAGATATTGGAACAATAACTTCAGATAATTTTATAGA 359320
359321CTTTCAATTCTATAGTAGATTAGCATTATTCTAGTTCCTAACAATGTTCCTTCCAATTTCACGAC 359385
359386TTTTCAATTCTATAGTAGATTAGCAGAACCTCCTACTTGTGACTCTTTCTAACATGTCAAAAGA 359449
359450CTTTCAATTCTATAGTAGATTAGCTTGTCTTGTGGGCATCTTAACTCTACTACGCCGTTTTGAT 359513
359514CTTTCAATTCTATAGTAGATTAGCACGGGTACTAAGGATAGGATAATGATTAACGAAAAGAAGTTGA 359580
359581CTTTCAATTCTATAGTAGATTAGCACAGACGCTATAAGAAGAAGAATAGAAGAATTGCTGAAGT 359644
359645CTTTCAATTCTATAGTAGATTAGCAATTCCGCGGATCAATCTTTACAGAAATGGTACAACT 359705
359706CTTTCAATTCTATAGTAGATTAGCATAAATATCAAATGTTTGCGTATTTCAGGATAATGAGGCTTA 359771
359772CTTTCAATTCTATAGTAGATTAGCGGATAATTCTTCAGAATTTAAGTAACTATGTAGTTTATAT 359835
359836CTTTCAATTCTATAGTAGATTAGCTCAATTCCTCCGCGAATTCTTTTGGAAAAACAAAAGAGATTAG 359902
359903CTTTCAATTCTATAGTAGATTAGCAGTGACACATATCGAAATGTCACACTATGGTTGAAAATGTTCC 359969
359970CTTTCAATTCTATAGTAGATTAGCATGGGGACCAGTCACGCTGATACCACCATTTTCAATTCT 360032
360033CTTTCAATTCTATAGTAGATTAGCCGGTGTATATGAACAATCCTGGACCAGCGTAACCGTTATACG 360098
360099CTTTCAATTCTATAGTAGATTAGCTATTAGTTAACACAAAACCTAATTTTTCTATTTCTCTCAC 360162
360163CTTTCAATTCTATAGTAGATTAGCAGTATGTAGTGGAATACATCAAAGATAGCATAGGTGATTTAGCAGA 360232
360233CTTTCAATTCTATAGTAGATTAGCAGAAAATAAAAGAATTAAATCAGTACCCGTGTTTAGTAATTGTA 360300
360301CTTTCAATTCTATAGTAGATTAGCCTGAGTATTGTATTTCATCATAGAATGGCGGGTCAGTGAAA 360365
360366CTTTCAATTCTATAGTAGATTAGCGAAAAACTAAAGAAGAAAGATCTCGTTACTTTCAATATTATTGA 360433
360434CTTTCAATTCTATAGTAGATTAGCTCACCCGTTTATGGGGTAGGTAATACCGGGTTTTCCTCAAT 360498
360499CTTTCAATTCTATAGTAGATTAGCTTGCCCCTCATATTTTGTTTAAACGAAAAAAATATAAAAGCTTTT 360567
360568CTTTCAATTCTATAGTAGATTAGCCTTTGGAGGTGGAGGTGGCGAAGTCCAAGAGATATCTGGAA 360632
360633CTTTCAATTCTATAGTAGATTAGCCAAGAGGCCGTGATCGAGAGGGCGTTAGAATCTCTAAAGCG 360697
360698CTTTCAATTCTATAGTAGATTAGCTACCATATTATAATGAAATAAAATTTATTTCTAAAATTAC 360761
360762CTTTCAATTCTATAGTAGATTAGCTATGGCCCCTCAATTAACTAGTACTTATGCACAATATGATAA 360827
360828CTTTCAATTCTATAGTAGATTAGCAATTGAAGGTTCCAATTTTCCTCACTTCAAATATTTTAAAA 360892
360893CTTTCAATTCTATAGTAGATTAGCACGATATCGCTGAGATTGTCAGGATCCACGTTGAAAGAGTA 360957
360958CTTTCAATTCTATAGTAGATTAGCCCAATACCCCCATCAAAAAATGTATGTTGACTTGAACT 361019
361020CTTTCAATTCTATAGTAGATTAGCTTCAAAATTAAATGTTAAAGATAAAACTGTGACAATAAT 361082
361083CTTTCAATTCTATAGTAGATTAGCGAGGACCAGCTATGGTCCTCTATAGGTGGACCATCTCAGGACCAGCTA 361154
361155CTTTCAATTCTATAGTAGATTAGCATAGCGACACTGGCTATCGGATGGTGGCTAGGGTCTACATT 361219
361220CTTTCAATTCTATAGTAGATTAGCTCGGAGAACTGGGTAGGTTTTTGGAGAACATAACCGATGA 361283
361284CTTTCAATTCTATAGTAGATTAGCATGGAGAGGGCAAAAAGTCAACTGTCTAACCCCGGGTGGGT 361348
361349CTTTCAATTCTATAGTAGATTAGCGCCAGCGCCACCCGTATAAGCAAATGTCATATTAGCATAAAT 361414
361415CTTTCAATTCTATAGTAGATTAGCTCGCTATACCGGTATTGATAAATAATGCCTTAGTCTTCTCAGGAT 361483
361484CTTTCAATTCTATAGTAGATTAGCCGTAACTTTACAATAAAAATAAAAAGGAGGTATTGTAAG 361546
361547CTTTCAATTCTATAGTAGATTAGCCCCTGCAAAGCCACCGGGCATTCCAGCCGGTAGTATGGGTGG 361612
361613CTTTCAATTCTATAGTAGATTAGCTTACTTTAATGGGAAAAACGAGTAGAAAAATTTAAATACT 361676
361677CTTTCAATTCTATAGTAGATTAGCACGGTCGCTCAAAAGGCGACCGTGATAAAAGTCAAGTT 361738
361739CTTTCAATTCTATAGTAGATTAGCAGTCCTCCGAGATATTGAAAGCCTTAAGATATTGATAGTA 361802
361803CTTTCAATTCTATAGTAGATTAGC361826
Left flanking sequence : Till position 355291 (length bp)
ATTCACTAAAGAGTTTTCTCGTTTAATTTATTAATTTATATAATAATTTGATTATGAAAGGAAAATTGAG
GAAAGTGTGTCAAAATCATAGGCCATAATA
Right flanking sequence : From position 361826 (length bp)
TGAGGGTTTTTTAACCCTCTATTTGATCTTTTCTTCTCCCTTTCTTATAAGTTTTTCTTCTCTACTCTTC
GATTAGTATTATATTACTCTTTCTTATCTT
Print the CRISPR sequence : From position bp To position bp