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CRISPRs details
NC_017304_2
Flanking alignement tool
Page manual
  
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NC_017304_2                                                                                                                 
top
Strain :
Clostridium thermocellum DSM 1313
RefSeq :
NC_017304 (chromosome circular)
CRISPR id :
NC_017304_2
DR consensus (30 bp) :
GTTTCAATTCCTCATAGGTACGATAAAAAC
Number of repetitions :
81
Begin Position :
976887
End Position :
982276
976887
GTTTTAATTCCTCATAGGCACGATAAAAAC
AAAACTTACCCGAAAGGGAAACAGCATCGGAATTCAC
976953
976954
GTTTCAATTCCTCATAGGTACGATAAAAAC
ACACCTGAGAAACTCGTGATTGTTCACAAGTACTCAC
977020
977021
GTTTCAATTCCTCATAGGTACGATAAAAAC
TAGTTAAGTTACGCTCATCAGCTATTGCTTTTACTTTGTCA
977091
977092
GTTTCAATTCCTCATAGGTACGATAAAAAC
TCTGTTATCTTTGCCACATAATCTCTCCTTTATAAAT
977158
977159
GTTTCAATTCCTCATAGGTACGATAAAAAC
CCGCAGCAGGGATAGAACTGACAGCAGACTACTGCG
977224
977225
GTTTCAATTCCTCATAGGTACGATAAAAAC
TAAAAACTCAGGAATGATTTGTATTTCACCGTCTACAGTACGA
977297
977298
GTTTCAATTCCTCATAGGTACGATAAAAAC
CCAGCTCATAAAGGATAGGTAAAAAGCTGTCGTCTG
977363
977364
GTTTCAATTCCTCATAGGTACGATAAAAAC
TTTGAAACAGTGAAAAAGATGGGATATACCTTTGTATGT
977432
977433
GTTTCAATTCCTCATAGGTACGATAAAAAC
ACGGAGGATGGGGAACTATTAGCACTACTATTGGATT
977499
977500
GTTTCAATTCCTCATAGGTACGATAAAAAC
GAGTTTGTAGTATCTGATAGGTTCAAGGATGAAAACGG
977567
977568
GTTTCAATTCCTCATAGGTACGATAAAAAC
TAGTATTAGAGAAAACGGGACAGAAGTAACTACAGC
977633
977634
GTTTCAATTCCTCATAGGTACGATAAAAAC
TAAACTGCACGAATAACTTGGATGAATATGTTTTGGG
977700
977701
GTTTCAATTCCTCATAGGTACGATAAAAAC
AATGGCTCGGAGCAGTTCGCATGCTTAGTTGACAA
977765
977766
GTTTCAATTCCTCATAGGTACGATAAAAAC
TACCTGAAGACGTGCTTATTAAGGTTGATGGAAATG
977831
977832
GTTTCAATTCCTCATAGGTACGATAAAAAC
GAAGAGCCCAAGGAAGAAAAGCCTGCGGACAAGCT
977896
977897
GTTTCAATTCCTCATAGGTACGATAAAAAC
TTGCTCCAAGCTACTTGTAGGGGGTGTATATATGGC
977962
977963
GTTTCAATTCCTCATAGGTACGATAAAAAC
CGTCCACTTCTAGCCGCCTTTCGGAGTGTTGACGTCCC
978030
978031
GTTTCAATTCCTCATAGGTACGATAAAAAC
AAAATAAGCGACCTCAAGGCAGCTGGACTGTTAGAT
978096
978097
GTTTCAATTCCTCATAGGTACGATAAAAAC
ACCAAATGTTTCATAAGGTATTGCAAAAATGAAATCTT
978164
978165
GTTTCAATTCCTCATAGGTACGATAAAAAC
GTGTTGAAATTGGCTCAGGCAGCGACAAATTTATTT
978230
978231
GTTTCAATTCCTCATAGGTACGATAAAAAC
GAAGCCTGATAGTCTTAACAGTGTACTTGATCGCA
978295
978296
GTTTCAATTCCTCATAGGTACGATAAAAAC
TGTGATTCCCTATTTTTTTATAATTGCAATTTGTTT
978361
978362
GTTTCAATTCCTCATAGGTACGATAAAAAC
TCATTGGAACTACGGCATGAAGAACTCGCATCGATAGA
978429
978430
GTTTCAATTCCTCATAGGTACGATAAAAAC
GGAGAATTTGTTATGCAACAAGTTGTAAGGTTTGAAA
978496
978497
GTTTCAATTCCTCATAGGTACGATAAAAAC
CGGTTCGGACCAGCAATGAAACGTATCAGAAACTGC
978562
978563
GTTTCAATTCCTCATAGGTACGATAAAAAC
CTGGCCCGCACATTGTTGATGACATCGTTCTCGTTGA
978629
978630
GTTTCAATTCCTCATAGGTACGATAAAAAC
AAATCACTGAACTCAAGCAAATTGATGTGTCAGAATA
978696
978697
GTTTCAATTCCTCATAGGTACGATAAAAAC
CCTTTCTGCGTATAAATGGTTCTAACTCTGCAGGTGG
978763
978764
GTTTCAATTCCTCATAGGTACGATAAAAAC
GCTTCGCAGAAGCAGGAACAACTTTGGCAGGAAAGCC
978830
978831
GTTTCAATTCCTCATAGGTACGATAAAAAC
CAACCTGGCGCTCATATCGATGGCCGAATCGCTGGAAT
978898
978899
GTTTCAATTCCTCATAGGTACGATAAAAAC
TTACTTATGACACACCCAAGCCCATTCCGGGGGCGG
978964
978965
GTTTCAATTCCTCATAGGTACGATAAAAAC
CCGCCAGCTCCGGACGGAAGCGAGGCAACGGCGGAA
979030
979031
GTTTCAATTCCTCATAGGTACGATAAAAAC
GGAATTATGGCTACGTATTAGAAAGTAAGCTAAAAGC
979097
979098
GTTTCAATTCCTCATAGGTACGATAAAAAC
AAGAGGAGGAAGGTTTCAGATGGGAGCAGTGGCAGGC
979164
979165
GTTTCAATTCCTCATAGGTACGATAAAAAC
TCGCACCGGTTGATCAGGCCGGTGCTATCCCACAATT
979231
979232
GTTTCAATTCCTCATAGGTACGATAAAAAC
AAAGGAGTTGATAGCGATATGCAGAATCAGTCCAATGC
979299
979300
GTTTCAATTCCTCATAGGTACGATAAAAAC
TTCATATAAATCAAAAGTGAATGTTTTCACTGTCGGAT
979367
979368
GTTTCAATTCCTCATAGGTACGATAAAAAC
TTTATTATTACATTGCTTAGAAAGGAGGCTGAACAA
979433
979434
GTTTCAATTCCTCATAGGTACGATAAAAAC
TTCATATAAATCAAAAGTGAATGTTTTCACTGTCGGAT
979501
979502
GTTTCAATTCCTCATAGGTACGATAAAAAC
TTCCGCGTAACAGCCAACTGCGACAGAAGATTGCCG
979567
979568
GTTTCAATTCCTCATAGGTACGATAAAAAC
TCTGTTCTACTTTTTTTTACTCTGGACAGTGGTGGA
979633
979634
GTTTCAATTCCTCATAGGTACGATAAAAAC
TCCTGCGAAATTATGGTTACAGGCGCCCAAGGCGCCA
979700
979701
GTTTCAATTCCTCATAGGTACGATAAAAAC
GAATCTTCAAACCGAATTCCCGGGATGTTCTGACACCA
979768
979769
GTTTCAATTCCTCATAGGTACGATAAAAAC
TCGGCCCGTCGCCGGATAAGTTTTTGTCCGGGAGGT
979834
979835
GTTTCAATTCCTCATAGGTACGATAAAAAC
GCGATATATCCAATTACTTGGCGCATAGTAAAATTATTTGT
979905
979906
GTTTCAATTCCTCATAGGTACGATAAAAAC
GTATAGAAATTGCCAGGATATGGCAAGAAAAAGAAA
979971
979972
GTTTCAATTCCTCATAGGTACGATAAAAAC
GTATCTCCAAGTTCAGTAGAACTATTTGATTCATCTA
980038
980039
GTTTCAATTCCTCATAGGTACGATAAAAAC
GAACCCACGGATATACCGATGTATCCCATGTGAACATA
980106
980107
GTTTCAATTCCTCATAGGTACGATAAAAAC
TGATAATTGCGCTATGCGGCAACGAGCTAATTAGCA
980172
980173
GTTTCAATTCCTCATAGGTACGATAAAAAC
TGTGACTCAACTTAGTGATAGGATTTGGCAAACTGCTT
980240
980241
GTTTCAATTCCTCATAGGTACGATAAAAAC
TCGGGAAGGTACCGACCTTATCCATCATGATGCTTA
980306
980307
GTTTCAATTCCTCATAGGTACGATAAAAAC
TATAGTAGATGCAGAAGAAGCCTTGCAGGAAATACT
980372
980373
GTTTCAATTCCTCATAGGTACGATAAAAAC
ACCTCCCTGAAGAAGTTTGGAAGAACATTGACACTA
980438
980439
GTTTCAATTCCTCATAGGTACGATAAAAAC
CGAAATAGTGACTACCGCATACTGCAAAATCAGGTA
980504
980505
GTTTCAATTCCTCATAGGTACGATAAAAAC
GGAGTGATAATATGGGTGGAACCTGGACCAGTCAAAA
980571
980572
GTTTCAATTCCTCATAGGTACGATAAAAAC
CTGCATATACATATGAGCCGTCGCAGCACATATCAGCG
980639
980640
GTTTCAATTCCTCATAGGTACGATAAAAAC
AGGCAAGAAAACCAATCAAGGATTGGAAAGCGTGTG
980705
980706
GTTTCAATTCCTCATAGGTACGATAAAAAC
GGGGAATACAGTTTGAACATCAAAATCAGACTGACAAA
980773
980774
GTTTCAATTCCTCATAGGTACGATAAAAAC
CGAATTGACTGTATTACCTATTCGGATGGAAGAAGAGT
980841
980842
GTTTCAATTCCTCATAGGTACGATAAAAAC
GGGCTGGATTTGAACTTATCGGCAGAATTGAAATCAGGGA
980911
980912
GTTTCAATTCCTCATAGGTACGATAAAAAC
TTCTGCCTCGGGGAAGGTCATGATATGTTCAAATGC
980977
980978
GTTTCAATTCCTCATAGGTACGATAAAAAC
CTCCTCATTTCTAAGCAATTTTGCCTTTGTAATAGT
981043
981044
GTTTCAATTCCTCATAGGTACGATAAAAAC
TTGTATCATATATTTTTATACTGTCAATAGTAATTT
981109
981110
GTTTCAATTCCTCATAGGTACGATAAAAAC
CTTGGAAGTGCGGAATTCTCCCTTCCAGGGGATGACCC
981177
981178
GTTTCAATTCCTCATAGGTACGATAAAAAC
CCAATAAGGTGTATGATGGGGAATTTACTGTTGATAC
981244
981245
GTTTCAATTCCTCATAGGTACGATAAAAAC
GATAGCACCTATATATTTACGTCCAGTATTAGACTGAT
981312
981313
GTTTCAATTCCTCATAGGTACGATAAAAAC
CTTTCAATACCTCCTCATTTATACTTTCAAAAAGTG
981378
981379
GTTTCAATTCCTCATAGGTACGATAAAAAC
AAGCAACGGGATCAAACCATCCAAAATAGTCATCAAGA
981446
981447
GTTTCAATTCCTCATAGGTACGATAAAAAC
AATGGATTGGATTTTGGAAAATGCTGATATATATTG
981512
981513
GTTTCAATTCCTCATAGGTACGATAAAAAC
TAAAAGAGGATTTAAAGACCTTATTCATCCCATCTG
981578
981579
GTTTCAATTCCTCATAGGTACGATAAAAAC
TCTTTAAATGGTGATATTTCTGATAGACTAGTTCTTA
981645
981646
GTTTCAATTCCTCATAGGTACGATAAAAAC
GTTGTTTTGTGAGGAGGTTTTCAGAAAGTAGATATAT
981712
981713
GTTTCAATTCCTCATAGGTACGATAAAAAC
TCAATAGCGTGATACAATCAAACTTCATGCGAAGCTA
981779
981780
GTTTCAATTCCTCATAGGTACGATAAAAAC
GGAAGAGATGAAGACATCGAATACATCCTTGAAAAAAT
981847
981848
GTTTCAATTCCTCATAGGTACGATAAAAAC
GGTTTAATCGAAGTAATCTTGTCGCCGCTTTTCTTGG
981914
981915
GTTTCAATTCCTCATAGGTACGATAAAAAC
TCAGAGATGATATGACGAATCAAGTTCTAAATGAAA
981980
981981
GTTTCAATTCCTCATAGGTACGATAAAAAC
TCTCTTGCAGCCCGTTCTCCAAAATTATCTTCAAAA
982046
982047
GTTTCAATTCCTCATAGGTACGATAAAAAC
TGAATGTAGCAATTGGGTTTTTCGTTTGGGCTGTCA
982112
982113
GTTTCAATTCCTCATAGGTACGATAAAAAC
CTAATTCAATATTGATTAAATGACTCTCTATAACAAA
982179
982180
GTTTCAATTCCTCATAGGTACGATAAAAAC
GTCCAAAAATGGAAAGAAAGATATCCGATGATGAAGA
982246
982247
GTTTCAATTCCTCATAGGTACGATAAAAAC
982276
Left flanking sequence : Till position 976887 (length
bp)
TAAATAGTTATAGGATATGTCAATATTTGCATTAATTTCAATTTATATTATAGGCACAACAAAACTATGA
TGAAATTAGCACGGGGACGGTATCTATTGT
Right flanking sequence : From position 982276 (length
bp)
CCCATAGAACTCGCTAAACTTCTGCTTTATATTTTAACTCTATATAAAACAAAAATCAACAATCAGAACA
AAAAAACTCTCTCAAGAGACCTATAAATCA
Print the CRISPR sequence : From position
bp To position
bp