Institut de Génétique et Microbiologie

CRISPR details


Home About CRISPRs News FAQs Help Contact Us Examples IGM
Université Paris Sud

Navigation

Home page
CRISPRs database
Browse CRISPRs
BLAST CRISPRs
FlankAlign
CRISPRs utilities
My CRISPRs DB
CRISPRs finder
CRISPRs comparison

Other Tools

CRISPRcompar
CRISPRtionary
CRISPRfinder

GPMS Links

GPMS Team
Tandem Repeats DB
MLVA Web Service


NC_018650_1                                                                                                                 top


Strain : Escherichia coli O104:H4 str. 2009EL-2050 RefSeq :NC_018650 (chromosome circular)
CRISPR id : NC_018650_1
DR consensus (29 bp) : GAGTTCCCCGCGCCAGCGGGGATAAACCGNumber of repetitions :14
Begin Position : 1164472 End Position : 1165293

1164472GAGTTCCCCGCGCCAGCGGGGATAAACCAGGAACTGGCGCTGCTGGAGCAAAACCCGGTAT 1164532
1164533GAGTTCCCCGCGCCAGCGGGGATAAACCGAAAAGGGCCGCATTGACGGCCCTGTGTTATCG 1164593
1164594GAGTTCCCCGCGCCAGCGGGGATAAACCGTTAGCTGTTAGCCAAACATGTCGACCTGTTTG 1164654
1164655GAGTTCCCCGCGCCAGCGGGGATAAACCGGGGTGGCGGTGGTGCTGTAATTCACACCGGTA 1164715
1164716GAGTTCCCCGCGCCAGCGGGGATAAACCGTATTCCCCCAGTCACCCCCGCCACCAAAATCA 1164776
1164777GAGTTCCCCGCGCCAGCGGGGATAAACCGATTTTTCAGACTCATCAAAATAATCCTTTAAT 1164837
1164838GAGTTCCCCGCGCCAGCGGGGATAAACCGCATTGCCTTTGCAGCGTCTTTCCGATCATTCA 1164898
1164899GAGTTCCCCGCGCCAGCGGGGATAAACCGAACGTGAGATACGCCTCCCAGCGGCGCTCGGT 1164959
1164960GAGTTCCCCGCGCCAGCGGGGATAAACCGCCGTCAAACAGTATCACCGCGTTAACGCCCGC 1165020
1165021GAGTTCCCCGCGCCAGCGGGGATAAACCGCCACACACGTCGAGCTGGTGGGGGTTAATGCT 1165081
1165082GAGTTCCCCGCGCCAGCGGGGATAAACCGACACCTCTACTGACGTTCCTGAACAAGAAGAT 1165142
1165143GAGTTCCCCGCGCCAGCGGGGATAAACCGAAACCGGACGAGGGCGCGCTAAAACGTGATTA 1165203
1165204GAGTTCCCCGCGCCAGCGGGGATAAACCGCCTCTCAATTTGTAACGTCTGCAATGTCAGGC 1165264
1165265GAGTTCCCCGTGCCAGCGGGGATAAACCA1165293
Left flanking sequence : Till position 1164472 (length bp)
GCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAA
ATCATTAATTAATAATAGGTTATGTTTACA
Right flanking sequence : From position 1165293 (length bp)
CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGT
AACACCTCATATTCAAAATAGTTCTCCATG
Print the CRISPR sequence : From position bp To position bp