Institut de Génétique et Microbiologie

CRISPR details


Home About CRISPRs News FAQs Help Contact Us Examples IGM
Université Paris Sud

Navigation

Home page
CRISPRs database
Browse CRISPRs
BLAST CRISPRs
FlankAlign
CRISPRs utilities
My CRISPRs DB
CRISPRs finder
CRISPRs comparison

Other Tools

CRISPRcompar
CRISPRtionary
CRISPRfinder

GPMS Links

GPMS Team
Tandem Repeats DB
MLVA Web Service


NC_020247_2                                                                                                                 top


Strain : Sulfolobus acidocaldarius Ron12/I RefSeq :NC_020247 (chromosome circular)
CRISPR id : NC_020247_2
DR consensus (24 bp) : GTAATAACGACAAGAAACTAAAACNumber of repetitions :79
Begin Position : 1668885 End Position : 1673568

1668885GTAATAACGACAAGAAACTAAAACATCTTCTCTGTCCTCTACTACTTTCTGCTCTTCTTT 1668944
1668945GTAATAACGACAAGAAACTAAAACTGAAAAGTTCATAAAAAAGTACCCTAACGTAGAACA 1669004
1669005GTAATAACGACAAGAAACTAAAACAATTTTATGATATCGCTTTTGTTCAAGGAAACAT 1669062
1669063GTAATAACGACAAGAAACTAAAACAATTCTAAGTGCACAAGAAGGACTAGAAGAGGCAGGCCT 1669125
1669126GTAATAACGACAAGAAACTAAAACTAATGCCCAGTAACATAGATGCCTCCTTGATTAT 1669183
1669184GTAATAACGACAAGAAACTAAAACAATTTGGATTGACGTCACCTCAAGATCTATTACCT 1669242
1669243GTAATAACGACAAGAAACTAAAACATATTTAAGCCTTACTCTTTACATTAAAAGTAACAA 1669302
1669303GTAATAACGACAAGAAACTAAAACTCGACGTTAGTCTTAGATTTTTATCATTTTTAGGT 1669361
1669362GTAATAACGACAAGAAACTAAAACTTGTGCTCTTTAATGTCAAACAGTGTGATCTATT 1669419
1669420GTAATAACGACAAGAAACTAAAACACAGTGCATGAAGTAGCATCATATGTCGTAAGTGA 1669478
1669479GTAATAACGACAAGAAACTAAAACTCTCTGGGTTAAGTGCAAAGAGCACTGGGATTACAA 1669538
1669539GTAATAACGACAAGAAACTAAAACCAACAAGGCTGAGAAGATAGCAAAGAAGCTAGTA 1669596
1669597GTAATAACGACAAGAAACTAAAACTACAATAATTTCAGATTTCCAGTAAATGATACAAATTC 1669658
1669659GTAATAACGACAAGAAACTAAAACTTGTCATTAAACTGACAACTTTGTCTCTGACCCAAA 1669718
1669719GTAATAACGACAAGAAACTAAAACAGTAGCGGTATACAAAAATGTATTTGTTGTGATA 1669776
1669777GTAATAACGACAAGAAACTAAAACTGGCTCACAGGCATTAATACCTGCAAAGCCTAGG 1669834
1669835GTAATAACGACAAGAAACTAAAACAAAAGTTTGCCAATTTAGGTGCTGTGCAGGAAGCATTTA 1669897
1669898GTAATAACGACAAGAAACTAAAACGAATAATTGTAGATCAGCCATCAACTTCCACACG 1669955
1669956GTAATAACGACAAGAAACTAAAACAGAAAATGAGTAGTGAGATAAAGACAAAAAATAAGT 1670015
1670016GTAATAACGACAAGAAACTAAAACAATTTCTATATAATCCAAGAGACACAGAGAGGTTTCTAC 1670078
1670079GTAATAACGACAAGAAACTAAAACTACATTACTTTTAGAAATATAGTATGAGCGTAACATA 1670139
1670140GTAATAACGACAAGAAACTAAAACCAGTACACAAAGTGGATAGGAAAAGTCAACAAT 1670196
1670197GTAATAACGACAAGAAACTAAAACATCGTATATTATATTGGGGCAGAAAAAATGAATGAT 1670256
1670257GTAATAACGACAAGAAACTAAAACCAGGTTCAATTTCAGTAAATAATGGCATTACAAT 1670314
1670315GTAATAACGACAAGAAACTAAAACAACATCAGACTTTTGCACTTTTATTAGAAGGCTTTGGA 1670376
1670377GTAATAACGACAAGAAACTAAAACGATACATTGCATATATTGGCAATCAGCAATACAA 1670434
1670435GTAATAACGACAAGAAACTAAAACACTATATATTGTTTGGAGCTTATCATAAACTTCATC 1670494
1670495GTAATAACGACAAGAAACTAAAACCTGAATAGAGAGATGATAGAAGAAACGGTAAGTA 1670552
1670553GTAATAACGACAAGAAACTAAAACTCAGCCTCTAATTCTGCTGCAACTTCCATCAATTTCCTT 1670615
1670616GTAATAACGACAAGAAACTAAAACATTAATTCCAAAGGACATTGAGAAGAAATTTGGCTTAAA 1670678
1670679GTAATAACGACAAGAAACTAAAACATATGAGCAACAGCAACTCAAATCTTTATATGAAGTC 1670739
1670740GTAATAACGACAAGAAACTAAAACCACCAAAGAGTTTTTGTCCAAAGCCTTTTATGGA 1670797
1670798GTAATAACGACAAGAAACTAAAACCAGTCTCAATGTCTTTATGAGACAATTCTATATCCAA 1670858
1670859GTAATAACGACAAGAAACTAAAACGCACTTCTACTTGCTTAACGCTATAGCAAGCAAGAA 1670918
1670919GTAATAACGACAAGAAACTAAAACGTTCATCAACCTCATGCTGAGTAAGACTATTAGTATGT 1670980
1670981GTAATAACGACAAGAAACTAAAACCTCGTATTCGTAAAAGCCCTCGTGGGTGGTGACGAT 1671040
1671041GTAATAACGACAAGAAACTAAAAACTTTACAACTAATTTTTTCAGGAAAACAAATTGAA 1671099
1671100GTAATAACGACAAGAAACTAAAACTATGTCTTAGATAGTTGAAAAAGCTAAAGCTTTT 1671157
1671158GTAATAACGACAAGAAACTAAAACGAATGTGTCCCCCTAGAGGTTTTCACCAAACAACCA 1671217
1671218GTAATAACGACAAGAAACTAAAACAAAAAACCTTTAACCTCTATCGAATGCTGTCAAAAA 1671277
1671278GTAATAACGACAAGAAACTAAAACAACGTTACGACCACTACTACTCAGAAGAAGATAGT 1671336
1671337GTAATAACGACAAGAAACTAAAACGAGGGATGAAGGCAAATCAGTATCAGCAATAGTAGAG 1671397
1671398GTAATAACGACAAGAAACTAAAACGAAGTAGAACAGCTGTTTTTCAGGATTGAAATTAT 1671456
1671457GTAATAACGACAAGAAACTAAAACAAGAGAATACTTTCTCGCCTCAGCAAGAATCGTATCAAT 1671519
1671520GTAATAACGACAAGAAACTAAAACGTATGTGGGAGAGCTTTATGAGTGGTAAGACACAC 1671578
1671579GTAATAACGACAAGAAACTAAAACATGCAGGTACTATACTGAGCCTGATGAACAGCA 1671635
1671636GTAATAACGACAAGAAACTAAAACAAATTTAAGGAAAATGGAGTGTATGTATATAAAT 1671693
1671694GTAATAACGACAAGAAACTAAAACCTCAATTATTTTCAATGCTTTTTCTTTTTCGTTGT 1671752
1671753GTAATAACGACAAGAAACTAAAACACATCAGCACTTATGGATACTACGCCATGCTCATCT 1671812
1671813GTAATAACGACAAGAAACTAAAACACTATTACTTTTGAAAATATGTAGATAAGACTGGT 1671871
1671872GTAATAACGACAAGAAACTAAAACTTACAGTTGTTCCGTTAGGAAGTATATAGTTACT 1671929
1671930GTAATAACGACAAGAAACTAAAACAAAATAATCATAAAACCCGAGCATTACGAAGAATTGA 1671990
1671991GTAATAATGACAAGAAACTAAAACTGTAAAGGACTTCTTAAAAAGGTTAGAGGGGTTTCTC 1672051
1672052GTAATAATGACAAGAAACTAAAACGTAATTATTCTGATGGGTGCTATAATCTCGATGGC 1672110
1672111GTAATAACGACAAGAAACTAAAACAGCGATTAGTTTAGTCGAATTAGCTATTGCGACTT 1672169
1672170GTAATAACGACGAGAAACTAAAACATGGGATCCTGATAATTCGGCATCAGCACAATTC 1672227
1672228GTAATAACGACAAGAAACTAAAACCTCTTCATTTGTCTCGTGAAATATAGGGTTTTTCA 1672286
1672287GTAATAACGACGAGAAACTAAAACATAGGGTAGTTCACAAAGAGCCAGCCCTCGTCAAC 1672345
1672346GTAATAACGACAAGAAACTAAAACCTTTACGTAGTAGTTATAGAGCTTCGTTACGTGCT 1672404
1672405GTAATAACGACAAGAAACTAAAACCTTGAACCATTGAACCTGCGATTGCAGGGATTAAGTAT 1672466
1672467GTAATAACGACAAGAAACTAAAACGCTGACTGGGGGTGAGCCAGAAATGAAGACTGGAAG 1672526
1672527GTAATAACGACAAGAAACTAAAACTAAAATTAGTCTGCTGGCCAATTAAGAACAAACTCT 1672586
1672587GTAATAACGACAAGAAACTAAAACGTGCAACAGGGTGAAACATAGATGAGCACATTTTT 1672645
1672646GTAATAACGACAAGAAACTAAAACATTATGCTCATTATCTCTGATTTCGACCTTAAAGC 1672704
1672705GTAATAACGACAAGAAACTAAAACCTACATTGTCCTGAAGTCCTAACTTCTTTAATTCCTT 1672765
1672766GTAATAACGACAAGAAACTAAAACTTTTTATTTTCAGTAGCTATCACCATAGTAGCCCTAAAA 1672828
1672829GTAATAACGACAAGAAACTAAAACTACTCCCCAGGCTTACCCAGCAAGAAGAGGAAGCCTT 1672889
1672890GTAATAACGACAAGAAACTAAAACTAGGAGGAAAATATAGGAATATAAAGATAGTACTA 1672948
1672949GTAATAACGACAAGAAACTAAAACTAGGAGGAAAATATAGGAATATAAAGATAGTACTA 1673007
1673008GTAATAACGACAAGAAACTAAAACTAGGAGGAAAATATAGGAATATAAAGATAGTACTA 1673066
1673067GTAATAACGACAAGAAACTAAAACTAGGAGGAAAATATAGGAATATAAAGATAGTACTA 1673125
1673126GTAATAACGACAAGAAACTAAAACTAGGAGGAAAATATAGGAATATAAAGATAGTACTA 1673184
1673185GTAATAACGACAAGAAACTAAAACTAGGAGGAAAATATAGGAATATAAAGATAGTACTA 1673243
1673244GTAATAACGACAAGAAACTAAAACCATTTTAGCTCAAGCATCACCAGCATCAATTGAAAG 1673303
1673304GTAATAACGACAAGAAACTAAAACACCGTTCCGTAGATATTATTACTGTAACTCCCTCCC 1673363
1673364GTAATAACGACAAGAAACTAAAACACTGGGCTCCCCGTGATCACTCCAGGTCCTTATGTTG 1673424
1673425GTAATAACGACAAGAAACTAAAACGACGCTAAAAAGCAAGAACAACAATCACAACAATCG 1673484
1673485GTAATAACGACAAGAAACTAAAACTTTCTTAGTGAATCCCATGTACGTATATCTAATTTA 1673544
1673545GTAATAACGACAAGAAACTAAAAC1673568
Left flanking sequence : Till position 1668885 (length bp)
AACTCCCTTCCGCACCCCAGGGAACAAAATTGACAATGAAGGAGAGAAAATATTTATAAACCAGGAAATA
AGAATGTAAAATTGATGAAGCCAACGATCA
Right flanking sequence : From position 1673568 (length bp)
ACTGTAACTATTTAAAATAGAATGATGAGAGAATGACAAAGCCTTGCCGTTTATGGCGAGGTAAAGGTTT
CTACTTACGAGAGAAAAGTTGTTATTAAGA
Print the CRISPR sequence : From position bp To position bp