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CRISPRs details
NZ_CP009170_5
Flanking alignement tool
Page manual
  
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NZ_CP009170_5                                                                                                                 
top
Strain :
Thermoanaerobacter kivui GCF_000763575
RefSeq :
NZ_CP009170 (chromosome circular)
CRISPR id :
NZ_CP009170_5
DR consensus (30 bp) :
GTTTCAATCCCTCTTAGGTAGGCTAAAAAC
Number of repetitions :
86
Begin Position :
2268103
End Position :
2273799
2268103
GTTTCAATCCCTCTTAGGTAGGCTAAAAAC
CTGTAATTGTTTTTGTGTATCTTATGCGCTTTCCTG
2268168
2268169
GTTTCAATCCCTCTTAGGTAGGCTAAAAAC
GGTTGTAGGAGACAGCAAGCGTGGCGAATACCCTGT
2268234
2268235
GTTTCAATCCCTCTTAGGTAGGCTAAAAAC
GTATCCGGTGTGTCAGTAGGAAGCACCGCTGTCACCT
2268301
2268302
GTTTCAATCCCTCTTAGGTAGGCTAAAAAC
AACAGCTGATTGACAAGCAGCTGATTGACAAACAGC
2268367
2268368
GTTTCAATCCCTCTTAGGTAGGCTAAAAAC
GCTCCAGAAAAATCAAGGCTTCCGGGCATTTGAATATA
2268435
2268436
GTTTCAATCCCTCTTAGGTAGGCTAAAAAC
AACTACACGAGAGACTGAAAAAATACAGCAACGAA
2268500
2268501
GTTTCAATCCCTCTTAGGTAGGCTAAAAAC
CTATCCTCCGCCAAGAAGGTGCTTTCTTAGCTGCTT
2268566
2268567
GTTTCAATCCCTCTTAGGTAGGCTAAAAAC
TAGTGCCCTATAACGGTGCAAATATCCTGCGTAGT
2268631
2268632
GTTTCAATCCCTCTTAGGTAGGCTAAAAAC
TTATTTCTGTTTTAAAGGGTAGCAAAAGGGTTGCATT
2268698
2268699
GTTTCAATCCCTCTTAGGTAGGCTAAAAAC
GGTTCTCCGCCTGCCGGAGGTTGCCACTCCGGCAGG
2268764
2268765
GTTTCAATCCCTCTTAGGTAGGCTAAAAAC
TCTAGTAAAACTAGAAGATGGAGAGAGGAGGTTGTCCT
2268832
2268833
GTTTCAATCCCTCTTAGGTAGGCTAAAAAC
CTGCTCTTTTGTAAGTTCTTCTACATTACTTGTACTG
2268899
2268900
GTTTCAATCCCTCTTAGGTAGGCTAAAAAC
GAGGGAACCGCCAAGGTTCTCTCGGAAATATTAGGAAT
2268967
2268968
GTTTCAATCCCTCTTAGGTAGGCTAAAAAC
TAGCAACGCCTATGATTGAAAGCCCGACTATAACCG
2269033
2269034
GTTTCAATCCCTCTTAGGTAGGCTAAAAAC
TGGAAAATCGTGATTTAGAAAAAATCATTGAAACATT
2269100
2269101
GTTTCAATCCCTCTTAGGTAGGCTAAAAAC
ATGCAAAAATTCAAATCGACTACACAGACCCTTTCAT
2269167
2269168
GTTTCAATCCCTCTTAGGTAGGCTAAAAAC
TGCCGGTTTTCCAAGTATTTCTGATATTTTATTAAT
2269233
2269234
GTTTCAATCCCTCTTAGGTCGGCTAAAAAC
CCCATGTCGCCATTTTTATTCATCCTCCTTTTTTGT
2269299
2269300
GTTTCAATCCCTCTTAGGTAGGCTAAAAAC
AACGCTGTCCGAGATTGACGCTGCCTTGGCACAGGT
2269365
2269366
GTTTCAATCCCTCTTAGGTAGGCTAAAAAC
ACAGGATAGCCTGCAAAGGTATTCGGTCTGCCAGCT
2269431
2269432
GTTTCAATCCCTCTTAGGTAGGCTAAAAAC
GAAGAAGGCCAAACAAAAAATGCAATCGTATGGTTT
2269497
2269498
GTTTCAATCCCTCTTAGGTAGGCTAAAAAC
CTCCATACCCTTCTTCATGTCAGCGAGTATCTCGC
2269562
2269563
GTTTCAATCCCTCTTAGGTAGGCTAAAAAC
GAGGTGAAGTAGTAAAGGTTTGGCTTACAGCGCATGA
2269629
2269630
GTTTCAATCCCTCTTAGGTAGGCTAAAAAC
TTTCCACCTTCCCATCATCCCCTTTCAGAAGGTCGC
2269695
2269696
GTTTCAATCCCTCTTAGGTAGGCTAAAAAC
GGGCTTGAGTACGATATACCGGAACCGGATGATTT
2269760
2269761
GTTTCAATCCCTCTTAGGTAGGCTAAAAAC
AGCGGGGTATGGGGGAGGGGAATACTAGCATATTCC
2269826
2269827
GTTTCAATCCCTCTTAGGTAGGCTAAAAAC
GAAAAACGAATGCTTCAGGACTTTCATGAACGGGGA
2269892
2269893
GTTTCAATCCCTCTTAGGTAGGCTAAAAAC
TCGATGACTTGGGTAAAGAAAACGTGTCTGAATACA
2269958
2269959
GTTTCAATCCCTCTTAGGTAGGCTAAAAAC
CAGTATGCACACGTTGTAATGGAAGCGGTTGGATAA
2270024
2270025
GTTTCAATCCCTCTTAGGTAGGCTAAAAAC
CTGACGAGATAAAAAATCCGCGGGGCGATTAGGCCTT
2270091
2270092
GTTTCAATCCCTCTTAGGTAGGCTAAAAAC
GCGGTGCGGATAAAGGGTTTCCCACGCTGGAAACCTC
2270158
2270159
GTTTCAATCCCTCTTAGGTAGGCTAAAAAC
AGCTATACTAAGGGCACGATGTTTTCCGCTAAAAAT
2270224
2270225
GTTTCAATCCCTCTTAGGTAGGCTAAAAAC
TGGTACCGGGTTCCCGTACTCTCAGTAGCAAACGAG
2270290
2270291
GTTTCAATCCCTCTTAGGTAGGCTAAAAAC
GCCTACCGGCGGGAAAATATTTTTCGGCAGTGCAGA
2270356
2270357
GTTTCAATCCCTCTTAGGTAGGCTAAAAAC
GAGTATTTCTAAACCCGCCGGTGGCCGGGGCGGGATA
2270423
2270424
GTTTCAATCCCTCTTAGGTAGGCTAAAAAC
ATCACTAGCTAATTTTTTTATTTGTCTTCTAATGCG
2270489
2270490
GTTTCAATCCCTCTTAGGTAGGCTAAAAAC
TTTTGTTATCAGGTCTAATCTGCCTTCAGTCCACGCAT
2270557
2270558
GTTTCAATCCCTCTTAGGTAGGCTAAAAAC
AATATTTAAAAGAGGGTAAAAATGTTATATATGATG
2270623
2270624
GTTTCAATCCCTCTTAGGTAGGCTAAAAAC
TAAGGGCAGTATAGAATATTTTAAAGTTGCATACAC
2270689
2270690
GTTTCAATCCCTCTTAGGTAGGCTAAAAAC
TCAGGATGGCAGTCGCTGGGGGAAATGCTTACCTCAGC
2270757
2270758
GTTTCAATCCCTCTTAGGTAGGCTAAAAAC
AACAAGCATGATAGCAGCACTAATGCCCCTTGGGATTT
2270825
2270826
ATTTCAATCCCTCTTAGGTAGGCTAAAAAC
GATATTAAGAAAACGGCTGAAGATTACTACATCGG
2270890
2270891
ATTTCAATCCCTCTTAGGTAGGCTAAAAAC
AAGACGAAAAGGGGCTAAAAATTAGGGCTAAATTGGCG
2270958
2270959
ATTTCAATCCCTCTTAGGTAGGCTAAAAAC
AAGACGAAAAGGGGCTAAAAATTAGGGCTAAATTGGCG
2271026
2271027
ATTTCAATCCCTCTTAGGTAGGCTAAAAAC
ATCATATGCAGAGTTTTGCAGATTATTATTTTGTACC
2271093
2271094
ATTTCAATCCCTCTTAGGTAGGCTAAAAAC
CTGCTGGTGGCTGTTCCTGGCAGTAGCTCTAGCAGTAGTAA
2271164
2271165
ATTTCAATCCCTCTTAGGTAGGCTAAAAAC
TAAGATACTCTATTTCTTCTTCCGTTAGCTCAGGA
2271229
2271230
ATTTCAATCCCTCTTAGGTAGGCTAAAAAC
TCTTTTGTATCCATTCTTATCCTCTCCATTCTTCG
2271294
2271295
ATTTCAATCCCTCTTAGGTAGGCTAAAAAC
GGATAAAAATATCCTTATAAGGACTGCATCAAGTGA
2271360
2271361
ATTTCAATCCCTCTTAGGTAGGCTAAAAAC
AGGATGGCCTCTATATAGGCCAGATTTCTTTTGTTATTTC
2271430
2271431
ATTTCAATCCCTCTTAGGTAGGCTAAAAAC
AAGAGTGAGTAATTATGAAGAGTCCATATTCAAGAATGCT
2271500
2271501
ATTTCAATCCCTCTTAGGTAGGCTAAAAAC
CTGGGCGTGCAATGGGTTTTGAGTCGTATACGCATT
2271566
2271567
ATTTCAATCCCTCTTAGGTAGGCTAAAAAC
TACGATGAAGAGAAGAAAAACGAAAGATTGTATGTAC
2271633
2271634
ATTTCAATCCCTCTTAGGTAGGCTAAAAAC
TAGCAGTTCCGCCAGTATGGGAAAATTGCCAAGGTTC
2271700
2271701
ATTTCAATCCCTCTTAGGTAGGCTAAAAAC
AATATGGAAAGAGTCAGGTGTAGACGTTGCAGAAGA
2271766
2271767
ATTTCAATCCCTCTTAGGTAGGCTAAAAAC
TAAGTCAACCAACTGCTTAATCACTCCGGAATAGTTCT
2271834
2271835
ATTTCAATCCCTCTTAGGTAGGCTAAAAAC
AAGAAAAGGCAATAAATATGTGTATTTCTCTACTCC
2271900
2271901
ATTTCAATCCCTCTTAGGTAGGCTAAAAAC
AGCATTATCCTCATCTTCACCTCCTTCATCTACTTC
2271966
2271967
ATTTCAATCCCTCTTAGGTAGGCTAAAAAC
AGCATTATCCTCATCTTCACCTCCTTCATCTACTTC
2272032
2272033
ATTTCAATCCCTCTTAGGTAGGCTAAAAAC
AAGAACTAATCAGGCTAGAAGAAGCAGTAAAAACATCAT
2272101
2272102
ATTTCAATCCCTCTTAGGTAGGCTAAAAAC
GTAGAGCACTGCTAAGTAAAGGTTTTGTTTTGTATGG
2272168
2272169
ATTTCAATCCCTCTTAGGTAGGCTAAAAAC
TTCCAGCATACTTACAAACATCTCAGCAAACTTCTT
2272234
2272235
ATTTCAATCCCTCTTAGGTAGGCTAAAAAC
ACGGGATACCAAACTCTCCAAATTGGTATCCCGCTTTTG
2272303
2272304
ATTTCAATCCCTCTTAGGTAGGCTAAAAAC
ACGTACTTTTACCTCACTAGCATTTAGAGTTACTGC
2272369
2272370
ATTTCAATCCCTCTTAGGTAGGCTAAAAAC
TATAAATGCGTCACTCTCTTTAAATTGTGCTTCTAAA
2272436
2272437
GTTTCAATCCCTCTTAGGTAGGCTAAAAAC
TTACCCGGGAGTACAACGGCTAGGAGGTGGTCTGT
2272501
2272502
GTTTCAATCCCTCTTAGGTAGGCTAAAAAC
TTGGGTATAAAAATATGAGTGCCCTCACAAATTTAT
2272567
2272568
GTTTCAATCCCTCTTAGGTAGGCTAAAAAC
AGGACGGAGAAAAGTATTTTTTGCTTCGCGTAAAAGG
2272634
2272635
GTTTCAATCCCTCTTAGGTAGGCTAAAAAC
AAATGAATTTGTGGCAACTCATCTACTGTGTTATTTT
2272701
2272702
GTTTCAATCCCTCTTAGGTAGGCTAAAAAC
AATAGGCGCTTGTCCTGATAGCCGTTCAGCTTTCTTAT
2272769
2272770
GTTTCAATCCCTCTTAGGTAGGCTAAAAAC
ATCTGTGCGCAAAAAAATAAAGCTGTTCACAGGTTT
2272835
2272836
GTTTCAATCCCTCTTAGGTAGGCTAAAAAC
AAAAGATACCTTTATGTGCAGGGAGGTTGCAGAGGT
2272901
2272902
GTTTCAATCCCTCTTAGGTAGGCTAAAAAC
AATAATCCCCCAAATGGATACACTCGTTATCAACAAT
2272968
2272969
GTTTCAATCCCTCTTAGGTAGGCTAAAAAC
CTTTTTCTCTTGTTCTCAGCAGCTGCAGATAGTCTA
2273034
2273035
GTTTCAATCCCTCTTAGGTAGGCTAAAAAC
AGTGTTATTATAGAGAATACAAATGCTTTTGCATCA
2273100
2273101
GTTTCAATCCCTCTTAGGTAGGCTAAAAAC
TATAGAAGAATGGATTGAACAGCATTATAAAGATTT
2273166
2273167
GTTTCAATCCCTCTTAGGTAGGCTAAAAAC
TTGCAAGCTTCCATTTTGTTTTGACTGCCACTCTT
2273231
2273232
GTTTCAATCCCTCTTAGGTAGGCTAAAAAC
CTATGTCCAATATGAGAACAGGTGTATCTGCTTATGTT
2273299
2273300
GTTTCAATCCCTCTTAGGTAGGCTAAAAAC
TTTTTCATGCGAAAAGAAGTACTTGTTCGGATTGTGCG
2273367
2273368
GTTTCAATCCCTCTTAGGTAGGCTAAAAAC
AAGGCATAAATTTGGCTCAGAATCGTTTCTAAAATG
2273433
2273434
GTTTCAATCCCTCTTAGGTAGGCTAAAAAC
AAGGCACAAATTTGGCTCAGAATCGTTTCTAAAATG
2273499
2273500
GTTTCAATCCCTCTTAGGTAGGCTAAAAAC
AATTACAAGAAGATATGCGCATCTGGGAAGTATCCGG
2273566
2273567
GTTTCAATCCCTCTTAGGTAGGCTAAAAAC
ATGGCTACTTCCATTCCGCATCCTATATCTACTCCAA
2273633
2273634
GTTTCAATCCCTCTTAGGTAGGCTAAAAAC
GCACAATAGGACAGGCGCAAGAGGAAGGAAAAGAAAAGG
2273702
2273703
GTTTCAATCCCTCTTAGGTAGGCTAAAAAC
AGGACATTTGGAACATGAGGGGAATATTTTTTCTAAC
2273769
2273770
GTTTCAATCCCTCTTAGGTAGGCTAAAAAC
2273799
Left flanking sequence : Till position 2268103 (length
bp)
GCAGCTGTTTCACTCATCCAGTAAGCTAGGGCATCCCCTTGGGAGTTTGCCGTAGTGATCTCTACACCTG
GTAGCGCGGGGATAAGGTACTTGGACTGAG
Right flanking sequence : From position 2273799 (length
bp)
ACGTTCAAAAAACCATAAAAAGCGAATAAAAATTTTGCCTCTCATAATGGCTTTGTCAAGTATCTTGCCT
TTATTATATCACATTATTCGATAAAATCAA
Print the CRISPR sequence : From position
bp To position
bp