Institut de Génétique et Microbiologie

CRISPR details


Home About CRISPRs News FAQs Help Contact Us Examples IGM
Université Paris Sud

Navigation

Home page
CRISPRs database
Browse CRISPRs
BLAST CRISPRs
FlankAlign
CRISPRs utilities
My CRISPRs DB
CRISPRs finder
CRISPRs comparison

Other Tools

CRISPRcompar
CRISPRtionary
CRISPRfinder

GPMS Links

GPMS Team
Tandem Repeats DB
MLVA Web Service


NZ_CP011396_3                                                                                                                 top


Strain : Salmonella enterica subsp. enterica serovar Thompson str. ATCC 8391 GCF_000486365 RefSeq :NZ_CP011396 (chromosome circular)
CRISPR id : NZ_CP011396_3
DR consensus (29 bp) : GTGTTCCCCGCGCCAGCGGGGATAAACCGNumber of repetitions :28
Begin Position : 970277 End Position : 971955

970277GTGTTCCCCGCGCCAGCGGGGATAAACCGAGTTTATTACCCCGCCATTTTTCAGTCGTCGC970337
970338GTGTTCCCCGCGCCAGCGGGGATAAACCGCGGTACGACGTAAACTGCGCGCCCGGACTGAT970398
970399GTGTTCCCCGCGCCAGCGGGGATAAACCGGAGGCTATCGGGACACAGGCAAACGTCGTGGC970459
970460GTGTTCCCCGCGCCAGCGGGGATAAACCGTTTGGTTGATGCGTCAAACCTCGCTAACTTTG970520
970521GTGTTCCCCGCGCCAGCGGGGATAAACCGGCGGAATAATAAATGGAGTGCCATTTGTAGCA970581
970582GTGTTCCCCGCGCCAGCGGGGATAAACCGGAGCGATGTTGGCATGGCATTGGTTTACTGTA970642
970643GTGTTCCCCGCGCCAGCGGGGATAAACCGTAGAGCCGTGTGTTAGCAGATAATCAGTATTA970703
970704GTGTTCCCCGCGCCAGCGGGGATAAACCGAAGCCGGACCACATTTTTCTTGCCGAACTCAC970764
970765GTGTTCCCCGCGCCAGCGGGGATAAACCGGCTGTTGCCGACGTCGGGCTTAAACACCACTG970825
970826GTGTTCCCCGCGCCAGCGGGGATAAACCGGACGCTTCACCTGCATCAAATTCTCCTCCAGT970886
970887GTGTTCCCCGCGCCAGCGGGGATAAACCGGCGGGCAACAATTTTAGAGGGGCTGCATTCGC970947
970948GTGTTCCCCGCGCCAGCGGGGATAAACCGACTACATAGATAACCAAAAATCCACTGGCAAGC971009
971010GTGTTCCCCGCGCCAGCGGGGATAAACCGCGCACGCGGGTTGCGTAACGGATATACGACAGC971071
971072GTGTTCCCCGCGCCAGCGGGGATAAACCGTCGCAGAACAGCTCTGCTTCCTTTGCGGAGAC971132
971133GTGTTCCCCGCGCCAGCGGGGATAAACCGTTGCGCTGTTCTATTGGCGGCAATTCTCTGAA971193
971194GTGTTCCCCGCGCCAGCGGGGATAAACCGGGACAGCACAGTTGATTACAGCAAAATTTACG971254
971255GTGTTCCCCGCGTCAGCGGGGATAAACCGACACGCCAGCCAACAATATTAATTTTGTCGTC971315
971316GTGTTCCCCGCGCCAGCGGGGATAAACCGCCTTGGCGGCAGCCACCTGAGCAACTGTCGGG971376
971377GTGTTCCCCGCGCCAGCGGGGATAAACCGCAGCTTCTTAACGAGGAGATTAACAGCGACGT971437
971438GTGTTCCCCGCGCCAGCGGGGATAAACCGTTAATGCGGTCATTGGTCATGTCTCTAAAAGA971498
971499GTGTTCCCCGCGCCAGCGGGGATAAACCGACTGTAGTTGCGGGTCAGGTTCCGGAATATCA971559
971560GTGTTCCCCGCGCCAGCGGGGATAAACCGGGATAGGGATCGGTAACTTTGCCATCGATCGGC971621
971622GTGTTCCCCGCGCCAGCGGGGATAAACCGAACGAATTGAGACTATTAGAGATTATTCGCCT971682
971683GTGTTCCCCGCGCCAGCGGGGATAAACCGGCAACCCATTAATTAACTAAGCAGTAATAAAC971743
971744GTGTTCCCCGCGCCAGCGGGGATAAACCGCACCCAGCGGGTAAACTGATCAGCAGCAGCAC971804
971805GTGTTCCCCGCGCCAGCGGGGATAAACCGAACCCTCAGAAAATAATCCAGACGTTACCGAA971865
971866GTGTTCCCCGCGCCAGCGGGGATAAACCGAGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA971926
971927ATGTTCCCCGCGCCAACGGGGATAAACAC971955
Left flanking sequence : Till position 970277 (length bp)
ATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAA
GGGCTTTTAGAACAAATATATAGTTTTAGT
Right flanking sequence : From position 971955 (length bp)
GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCA
CTACATCGCGGCTACGGCGCTCAATCCTCC
Print the CRISPR sequence : From position bp To position bp