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CRISPRs details
NZ_CP013675_1
Flanking alignement tool
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NZ_CP013675_1                                                                                                                 
top
Strain :
Xanthomonas oryzae pv. oryzae GCF_001746655
RefSeq :
NZ_CP013675 (chromosome circular)
CRISPR id :
NZ_CP013675_1
DR consensus (31 bp) :
GTCGCGTCCTCACGGGCGCGTGGATTGAAAC
Number of repetitions :
88
Begin Position :
4176005
End Position :
4181745
4176005
GTCGCGTCCTCACGGGCGCGTGGATTGAAAC
TGCGTTTGATGCATCTGTCGGCGTCATGCAGGCCGC
4176071
4176072
GTCGCGTCCTCACGGGCGCGTGGATTGAAAC
TTGCGGATGAGCCGGAACACATACGCCGTGGCC
4176135
4176136
GTCGCGTCCTCACGGGCGCGTGGATTGAAAC
CCGGCAAACTTACCGTGGTCTAGCTTACGCAGGCC
4176201
4176202
GTCGCGTCCTCACGGGCGCGTGGATTGAAAC
CTTCTGTTGGCGGAGGCCTTTCGGGCCCGTGTGTT
4176267
4176268
GTCGCGTCCTCACGGGCGCGTGGATTGAAAC
CAGTAAACTTAACGTTGTCCAGCATGTCAAACAC
4176332
4176333
GTCGCGTCCTCACGGGCGCGTGGATTGAAAC
ACGAGCTGGACTCAGTACCACAGAGACTCAACCGC
4176398
4176399
GTCGCGTCCTCACGGGCGCGTGGATTGAAAC
TGGAATGTTGTGGACAAGGTAAGGGGCGTGGGTG
4176463
4176464
GTCGCGTCCTCACGGGCGCGTGGATTGAAAC
TAGCTCGCTCATGTCGATGTCCTCCCGCGGTGTCG
4176529
4176530
GTCGCGTCCTCACGGGCGCGTGGATTGAAAC
GCGCCATAGAGCGCGAATCTCAAATGCGGCCTTGCC
4176596
4176597
GTCGCGTCCTCACGGGCGCGTGGATTGAAAC
ATCGTGCGGCATTGCCCAACGCCTGATGCGTTGC
4176661
4176662
GTCGCGTCCTCACGGGCGCGTGGATTGAAAC
GCCATTGCCGCATACGCCGCGTTGCGCATCGCTGT
4176727
4176728
GTCGCGTCCTCACGGGCGCGTGGATTGAAAC
CTGCACTGCGTCGCCACGCGCATCGACATTACGA
4176792
4176793
GTCGCGTCCTCACGGGCGCGTGGATTGAAAC
ATAGCAGCCGCAGATTACTTCAAAGGATCTTGCC
4176857
4176858
GTCGCGTCCTCACGGGCGCGTGGATTGAAAC
AACTGGGCAAGTCCTAAGCAGAGGTCAGCGCTGTT
4176923
4176924
GTCGCGTCCTCACGGGCGCGTGGATTGAAAC
CCAGGGCAGCGGAAATCGTTCGTCTGGCTCAACAA
4176989
4176990
GTCGCGTCCTCACGGGCGCGTGGATTGAAAC
ATGGCCTTGCGCCCGATCTTGCGGCACGCGACCT
4177054
4177055
GTCGCGTCCTCACGGGCGCGTGGATTGAAAC
CAATGGTTAGTGCACCTGGTCCTCGGCAACGCTC
4177119
4177120
GTCGCGTCCTCACGGGCGCGTGGATTGAAAC
GTGCCAAGTGTCTTACCAGCAACGGACGGCACATC
4177185
4177186
GTCGCGTCCTCACGGGCGCGTGGATTGAAAC
TGGCAAACGGTGGTAACTCGTCTGCTATTAGACG
4177250
4177251
GTCGCGTCCTCACGGGCGCGTGGATTGAAAC
TATAATGTCGCGTACATGACGTTTAATGACTCCGT
4177316
4177317
GTCGCGTCCTCACGGGCGCGTGGATTGAAAC
TTGTCCTCATCCTGGAGCGCACCACCCGCCTGGCT
4177382
4177383
GTCGCGTCCTCACGGGCGCGTGGATTGAAAC
CAGCGCAACATGGTCACGGTGCTGGCCGAAGAGCG
4177448
4177449
GTCGCGTCCTCACGGGCGCGTGGATTGAAAC
GGCCAGACGCTGGGTGTCAGCCAGTCCGGTAATGA
4177514
4177515
GTCGCGTCCTCACGGGCGCGTGGATTGAAAC
TCCGTAGGGGGTTCCCCCCTACACCCCCGGATCGG
4177580
4177581
GTCGCGTCCTCACGGGCGCGTGGATTGAAAC
ATGAAGTCCGGCATGGGCAATAGGCTCAGCACGTA
4177646
4177647
GTCGCGTCCTCACGGGCGCGTGGATTGAAAC
TGTGGATTTATGGGCGCGCTGTGTGGTTGGGCAGGC
4177713
4177714
GTCGCGTCCTCACGGGCGCGTGGATTGAAAC
CTCAAAATTGCACAGTATCCAGAGGAGGTGACCACA
4177780
4177781
GTCGCGTCCTCACGGGCGCGTGGATTGAAAC
GGACACGTTTCTTTTCCTTGCGGTATTTGTAAATG
4177846
4177847
GTCGCGTCCTCACGGGCGCGTGGATTGAAAC
ATCAACGGCCCATTTGACATTGTGGCCTGGCAGCC
4177912
4177913
GTCGCGTCCTCACGGGCGCGTGGATTGAAAC
AGCACTACTGCTGCATACTGCCCAGCTATGCCCG
4177977
4177978
GTCGCGTCCTCACGGGCGCGTGGATTGAAAC
TCGCCTGTGGACCCGGACCTGGACACGGTCGCGAAG
4178044
4178045
GTCGCGTCCTCACGGGCGCGTGGATTGAAAC
GTTACTCGTGTCGAAGTACCAAGTCTTAATCCCA
4178109
4178110
GTCGCGTCCTCACGGGCGCGTGGATTGAAAC
TTAATCCGCATCTTGGCATACCTATAGGCATTCC
4178174
4178175
GTCGCGTCCTCACGGGCGCGTGGATTGAAAC
TCCGCCCCATCTAAGTCAATCCAACTTGTTGGTGC
4178240
4178241
GTCGCGTCCTCACGGGCGCGTGGATTGAAAC
ACACAACTTCGCGCCATCATCGCCGGCGTAACGC
4178305
4178306
GTCGCGTCCTCACGGGCGCGTGGATTGAAAC
AGGGTGTTAGCTGGCACAAGCTGAGAAGCAAATGGAGG
4178374
4178375
GTCGCGTCCTCACGGGCGCGTGGATTGAAAC
ACTGTAAGGGCATTGATCCAGGGACAGGCCAATAT
4178440
4178441
GTCGCGTCCTCACGGGCGCGTGGATTGAAAC
CTGCGAGGGCGAGCTCGCGTACTTGCTCAATATAC
4178506
4178507
GTCGCGTCCTCACGGGCGCGTGGATTGAAAC
TTGGGCGGATAGGCGAAGCCGTGCGCATTGACC
4178570
4178571
GTCGCGTCCTCACGGGCGCGTGGATTGAAAC
TCGAGCGCTTGGCGCGCGGCGAACGGATCGCGC
4178634
4178635
GTCGCGTCCTCACGGGCGCGTGGATTGAAAC
AGACCGTTCGGGGTGATGCCGAGCAGCTTGACCAG
4178700
4178701
GTCGCGTCCTCACGGGCGCGTGGATTGAAAC
CTCCGGGACGGTCAGCTAGAGACCTTCCGCTACG
4178765
4178766
GTCGCGTCCTCACGGGCGCGTGGATTGAAAC
GCCCACACGCCGATCGCACAGAAATCCGATGTCT
4178830
4178831
GTCGCGTCCTCACGGGCGCGTGGATTGAAAC
GCACATGACGCTGCGCGCATCGCGCAGATTCGCC
4178895
4178896
GTCGCGTCCTCACGGGCGCGTGGATTGAAAC
CCATTTACAGACAGACCTGAGGGCGAAGTGGCGTA
4178961
4178962
GTCGCGTCCTCACGGGCGCGTGGATTGAAAC
CCAAATCGGAGGTCTGCACTGGCATATGCTGAC
4179025
4179026
GTCGCGTCCTCACGGGCGCGTGGATTGAAAC
GTTAAGGAAGCTCATGCAGTTGCCCAGGCTCGT
4179089
4179090
GTCGCGTCCTCACGGGCGCGTGGATTGAAAC
GTCCTGGGACGCCTCGCCGGCAGCGTCGCAGGCATG
4179156
4179157
GTCGCGTCCTCACGGGCGCGTGGATTGAAAC
ACCTTCCCCGCGATGCGGCCGATGCGCTGCAGGC
4179221
4179222
GTCGCGTCCTCACGGGCGCGTGGATTGAAAC
TATTTCGCACGAGATGCGTGCAGCACCTGCGATC
4179286
4179287
GTCGCGTCCTCACGGGCGCGTGGATTGAAAC
AGCTGCGTTGGTCCGACCACTCTGGTGCGAGGTTA
4179352
4179353
GTCGCGTCCTCACGGGCGCGTGGATTGAAAC
TCGGCGACGTGGAGCACAAGACCAGCAAGAGTGGC
4179418
4179419
GTCGCGTCCTCACGGGCGCGTGGATTGAAAC
CCATGCGGCGAGGTTTCCACGCTGACACTCCCG
4179482
4179483
GTCGCGTCCTCACGGGCGCGTGGATTGAAAC
TTAGCCACGATGGCATAAATGTCACTTGGCAGAT
4179547
4179548
GTCGCGTCCTCACGGGCGCGTGGATTGAAAC
TGAGACTTGTCTCTGAGGCACCAGATATGCAGGTG
4179613
4179614
GTCGCGTCCTCACGGGCGCGTGGATTGAAAC
ACATCGTTCGACAGGGTGATGGCGTTCGGTTGCA
4179678
4179679
GTCGCGTCCTCACGGGCGCGTGGATTGAAAC
CGCGCCAAGGGGGCACCTGCCCGCTCCAACTCCTC
4179744
4179745
GTCGCGTCCTCACGGGCGCGTGGATTGAAAC
TTCGTGCAGCTGGTTGGGTGATCTTCGCCATTGCC
4179810
4179811
GTCGCGTCCTCACGGGCGCGTGGATTGAAAC
TCACGAATAGGCGCGGTCCAGGGCCACGCAGTGGC
4179876
4179877
GTCGCGTCCTCACGGGCGCGTGGATTGAAAC
GCCAACGCGAAACCTCTGAAACGTTGCATTGCTG
4179941
4179942
GTCGCGTCCTCACGGGCGCGTGGATTGAAAC
TCAGCGCGTGTGGAGCGTTATCCGTAGGGGCGCT
4180006
4180007
GTCGCGTCCTCACGGGCGCGTGGATTGAAAC
CCGACGTTGGCCAGCCTCTACGAAGGCGCTGTAGCC
4180073
4180074
GTCGCGTCCTCACGGGCGCGTGGATTGAAAC
TAGTTGTGACGATGGATGCTTCTACAATTTCACCA
4180139
4180140
GTCGCGTCCTCACGGGCGCGTGGATTGAAAC
AGGTGTTGCGCGCTGTCAAAGCGTCTGCACGCGT
4180204
4180205
GTCGCGTCCTCACGGGCGCGTGGATTGAAAC
ACCAAAGATCGCGCCGACCCCAATAAGCCGGTGGCC
4180271
4180272
GTCGCGTCCTCACGGGCGCGTGGATTGAAAC
AAGATTGGACCCTCGCTGGTGATGATCGGCGCGGC
4180337
4180338
GTCGCGTCCTCACGGGCGCGTGGATTGAAAC
ATTTCATGAGCGCGCATGCGCAGATCAGCAAGCAA
4180403
4180404
GTCGCGTCCTCACGGGCGCGTGGATTGAAAC
GTGATGGTGCTGGAACAGGCGTTGTCGGCTGTGCTG
4180470
4180471
GTCGCGTCCTCACGGGCGCGTGGATTGAAAC
TTGAGATAAGCGGCGATCTGGTCGGCCGTGTAACC
4180536
4180537
GTCGCGTCCTCACGGGCGCGTGGATTGAAAC
TAGATCGCCCACAAAGGACCGTGGATATGTGGACA
4180602
4180603
GTCGCGTCCTCACGGGCGCGTGGATTGAAAC
TTTCGCGGCGTGATCACCTGGTCGGCGATTAACG
4180667
4180668
GTCGCGTCCTCACGGGCGCGTGGATTGAAAC
TATACGGAGCGTGGAGGGTGATCTTAAGGTTGC
4180731
4180732
GTCGCGTCCTCACGGGCGCGTGGATTGAAAC
ATCGTGCGGCATTGCCCAACGCCTGATGCGTTGC
4180796
4180797
GTCGCGTCCTCACGGGCGCGTGGATTGAAAC
TGGATGCTGACGTTCGTGACTTGCGCGCCGCTGTC
4180862
4180863
GTCGCGTCCTCACGGGCGCGTGGATTGAAAC
GGGCGCGGGGCGAGCGGGACGACCTGGATGCTCAT
4180928
4180929
GTCGCGTCCTCACGGGCGCGTGGATTGAAAC
GTTCTATACGCGGAACGGCGCGGGCACGCTGCTG
4180993
4180994
GTCGCGTCCTCACGGGCGCGTGGATTGAAAC
GTGGCCCACGTCGAGTCGCAGGCGAAACGACCGC
4181058
4181059
GTCGCGTCCTCACGGGCGCGTGGATTGAAAC
AAGCTGACTAGCTCGAAGAGCCAAGCGGCGATGAC
4181124
4181125
GTCGCGTCCTCACGGGCGCGTGGATTGAAAC
ACGTTCAAGCCGCTCGCCCTGGGCGACCGGTGGGA
4181190
4181191
GTCGCGTCCTCACGGGCGCGTGGATTGAAAC
CCGACCTCAAGGCGCGTTCCTCCGGTTCGATCCAA
4181256
4181257
GTCGCGTCCTCACGGGCGCGTGGATTGAAAC
ATGGGTAGTAACGTATCCACGGCCCGTGAAGCG
4181320
4181321
GTCGCGTCCTCACGGGCGCGTGGATTGAAAC
ACGTAGAACGAGCGCTTGTTATAGCGCTCGCGCCAC
4181387
4181388
GTCGCGTCCTCACGGGCGCGTGGATTGAAAC
CTGCACATACTCAATCAGGGCGCTGTCGGTGCGA
4181452
4181453
GTCGCGTCCTCACGGGCGCGTGGATTGAAAC
ACCGCATCCCGGAAGACCCACAATGTTGTCCGCC
4181517
4181518
GTCGCGTCCTCACGGGCGCGTGGATTGAAAC
GCCCGACGGGTATGAGCAAGTCTTTGCTGGGATACC
4181584
4181585
GTCGCGTCCTCACGGGCGCGTGGATTGAAAC
CGCGACGGGCTGGAGCTGGTAACCCCGTCGCAGA
4181649
4181650
GTCGCGTCCTCACGGGCGCGTGGATTGAAAC
GAGTGCCCGGGGTCGGTGTCGGCGCAGGCTGGCC
4181714
4181715
GTCGCGTCCTCACGGGCGCGTGGATTGAAAC
4181745
Left flanking sequence : Till position 4176005 (length
bp)
TCGCGGGTGCTCATATTTGCAAGGCATGGAACCTGTTCGCGTTCCTGTTCGCGAAATGACGGGTTTTCCC
TCAAGACGCGCAAGCACTTATGCTGGCGGG
Right flanking sequence : From position 4181745 (length
bp)
ATGACGCGTCAGCATTACTCATAAGTCAGAAATATAGGCGACACTTGGATGCGTGAAGAACGAGCGCACC
AATTCTGGTCGAGCTGCAATGTCGGACAAC
Print the CRISPR sequence : From position
bp To position
bp