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CRISPRs details
NZ_CP016502_2
Flanking alignement tool
Page manual
  
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NZ_CP016502_2                                                                                                                 
top
Strain :
Ruminiclostridium thermocellum DSM 2360 GCF_001692755
RefSeq :
NZ_CP016502 (chromosome circular)
CRISPR id :
NZ_CP016502_2
DR consensus (30 bp) :
GTTTCAATTCCTCATAGGTACGATAAAAAC
Number of repetitions :
81
Begin Position :
979773
End Position :
985162
979773
GTTTTAATTCCTCATAGGCACGATAAAAAC
AAAACTTACCCGAAAGGGAAACAGCATCGGAATTCAC
979839
979840
GTTTCAATTCCTCATAGGTACGATAAAAAC
ACACCTGAGAAACTCGTGATTGTTCACAAGTACTCAC
979906
979907
GTTTCAATTCCTCATAGGTACGATAAAAAC
TAGTTAAGTTACGCTCATCAGCTATTGCTTTTACTTTGTCA
979977
979978
GTTTCAATTCCTCATAGGTACGATAAAAAC
TCTGTTATCTTTGCCACATAATCTCTCCTTTATAAAT
980044
980045
GTTTCAATTCCTCATAGGTACGATAAAAAC
CCGCAGCAGGGATAGAACTGACAGCAGACTACTGCG
980110
980111
GTTTCAATTCCTCATAGGTACGATAAAAAC
TAAAAACTCAGGAATGATTTGTATTTCACCGTCTACAGTACGA
980183
980184
GTTTCAATTCCTCATAGGTACGATAAAAAC
CCAGCTCATAAAGGATAGGTAAAAAGCTGTCGTCTG
980249
980250
GTTTCAATTCCTCATAGGTACGATAAAAAC
TTTGAAACAGTGAAAAAGATGGGATATACCTTTGTATGT
980318
980319
GTTTCAATTCCTCATAGGTACGATAAAAAC
ACGGAGGATGGGGAACTATTAGCACTACTATTGGATT
980385
980386
GTTTCAATTCCTCATAGGTACGATAAAAAC
GAGTTTGTAGTATCTGATAGGTTCAAGGATGAAAACGG
980453
980454
GTTTCAATTCCTCATAGGTACGATAAAAAC
TAGTATTAGAGAAAACGGGACAGAAGTAACTACAGC
980519
980520
GTTTCAATTCCTCATAGGTACGATAAAAAC
TAAACTGCACGAATAACTTGGATGAATATGTTTTGGG
980586
980587
GTTTCAATTCCTCATAGGTACGATAAAAAC
AATGGCTCGGAGCAGTTCGCATGCTTAGTTGACAA
980651
980652
GTTTCAATTCCTCATAGGTACGATAAAAAC
TACCTGAAGACGTGCTTATTAAGGTTGATGGAAATG
980717
980718
GTTTCAATTCCTCATAGGTACGATAAAAAC
GAAGAGCCCAAGGAAGAAAAGCCTGCGGACAAGCT
980782
980783
GTTTCAATTCCTCATAGGTACGATAAAAAC
TTGCTCCAAGCTACTTGTAGGGGGTGTATATATGGC
980848
980849
GTTTCAATTCCTCATAGGTACGATAAAAAC
CGTCCACTTCTAGCCGCCTTTCGGAGTGTTGACGTCCC
980916
980917
GTTTCAATTCCTCATAGGTACGATAAAAAC
AAAATAAGCGACCTCAAGGCAGCTGGACTGTTAGAT
980982
980983
GTTTCAATTCCTCATAGGTACGATAAAAAC
ACCAAATGTTTCATAAGGTATTGCAAAAATGAAATCTT
981050
981051
GTTTCAATTCCTCATAGGTACGATAAAAAC
GTGTTGAAATTGGCTCAGGCAGCGACAAATTTATTT
981116
981117
GTTTCAATTCCTCATAGGTACGATAAAAAC
GAAGCCTGATAGTCTTAACAGTGTACTTGATCGCA
981181
981182
GTTTCAATTCCTCATAGGTACGATAAAAAC
TGTGATTCCCTATTTTTTTATAATTGCAATTTGTTT
981247
981248
GTTTCAATTCCTCATAGGTACGATAAAAAC
TCATTGGAACTACGGCATGAAGAACTCGCATCGATAGA
981315
981316
GTTTCAATTCCTCATAGGTACGATAAAAAC
GGAGAATTTGTTATGCAACAAGTTGTAAGGTTTGAAA
981382
981383
GTTTCAATTCCTCATAGGTACGATAAAAAC
CGGTTCGGACCAGCAATGAAACGTATCAGAAACTGC
981448
981449
GTTTCAATTCCTCATAGGTACGATAAAAAC
CTGGCCCGCACATTGTTGATGACATCGTTCTCGTTGA
981515
981516
GTTTCAATTCCTCATAGGTACGATAAAAAC
AAATCACTGAACTCAAGCAAATTGATGTGTCAGAATA
981582
981583
GTTTCAATTCCTCATAGGTACGATAAAAAC
CCTTTCTGCGTATAAATGGTTCTAACTCTGCAGGTGG
981649
981650
GTTTCAATTCCTCATAGGTACGATAAAAAC
GCTTCGCAGAAGCAGGAACAACTTTGGCAGGAAAGCC
981716
981717
GTTTCAATTCCTCATAGGTACGATAAAAAC
CAACCTGGCGCTCATATCGATGGCCGAATCGCTGGAAT
981784
981785
GTTTCAATTCCTCATAGGTACGATAAAAAC
TTACTTATGACACACCCAAGCCCATTCCGGGGGCGG
981850
981851
GTTTCAATTCCTCATAGGTACGATAAAAAC
CCGCCAGCTCCGGACGGAAGCGAGGCAACGGCGGAA
981916
981917
GTTTCAATTCCTCATAGGTACGATAAAAAC
GGAATTATGGCTACGTATTAGAAAGTAAGCTAAAAGC
981983
981984
GTTTCAATTCCTCATAGGTACGATAAAAAC
AAGAGGAGGAAGGTTTCAGATGGGAGCAGTGGCAGGC
982050
982051
GTTTCAATTCCTCATAGGTACGATAAAAAC
TCGCACCGGTTGATCAGGCCGGTGCTATCCCACAATT
982117
982118
GTTTCAATTCCTCATAGGTACGATAAAAAC
AAAGGAGTTGATAGCGATATGCAGAATCAGTCCAATGC
982185
982186
GTTTCAATTCCTCATAGGTACGATAAAAAC
TTCATATAAATCAAAAGTGAATGTTTTCACTGTCGGAT
982253
982254
GTTTCAATTCCTCATAGGTACGATAAAAAC
TTTATTATTACATTGCTTAGAAAGGAGGCTGAACAA
982319
982320
GTTTCAATTCCTCATAGGTACGATAAAAAC
TTCATATAAATCAAAAGTGAATGTTTTCACTGTCGGAT
982387
982388
GTTTCAATTCCTCATAGGTACGATAAAAAC
TTCCGCGTAACAGCCAACTGCGACAGAAGATTGCCG
982453
982454
GTTTCAATTCCTCATAGGTACGATAAAAAC
TCTGTTCTACTTTTTTTTACTCTGGACAGTGGTGGA
982519
982520
GTTTCAATTCCTCATAGGTACGATAAAAAC
TCCTGCGAAATTATGGTTACAGGCGCCCAAGGCGCCA
982586
982587
GTTTCAATTCCTCATAGGTACGATAAAAAC
GAATCTTCAAACCGAATTCCCGGGATGTTCTGACACCA
982654
982655
GTTTCAATTCCTCATAGGTACGATAAAAAC
TCGGCCCGTCGCCGGATAAGTTTTTGTCCGGGAGGT
982720
982721
GTTTCAATTCCTCATAGGTACGATAAAAAC
GCGATATATCCAATTACTTGGCGCATAGTAAAATTATTTGT
982791
982792
GTTTCAATTCCTCATAGGTACGATAAAAAC
GTATAGAAATTGCCAGGATATGGCAAGAAAAAGAAA
982857
982858
GTTTCAATTCCTCATAGGTACGATAAAAAC
GTATCTCCAAGTTCAGTAGAACTATTTGATTCATCTA
982924
982925
GTTTCAATTCCTCATAGGTACGATAAAAAC
GAACCCACGGATATACCGATGTATCCCATGTGAACATA
982992
982993
GTTTCAATTCCTCATAGGTACGATAAAAAC
TGATAATTGCGCTATGCGGCAACGAGCTAATTAGCA
983058
983059
GTTTCAATTCCTCATAGGTACGATAAAAAC
TGTGACTCAACTTAGTGATAGGATTTGGCAAACTGCTT
983126
983127
GTTTCAATTCCTCATAGGTACGATAAAAAC
TCGGGAAGGTACCGACCTTATCCATCATGATGCTTA
983192
983193
GTTTCAATTCCTCATAGGTACGATAAAAAC
TATAGTAGATGCAGAAGAAGCCTTGCAGGAAATACT
983258
983259
GTTTCAATTCCTCATAGGTACGATAAAAAC
ACCTCCCTGAAGAAGTTTGGAAGAACATTGACACTA
983324
983325
GTTTCAATTCCTCATAGGTACGATAAAAAC
CGAAATAGTGACTACCGCATACTGCAAAATCAGGTA
983390
983391
GTTTCAATTCCTCATAGGTACGATAAAAAC
GGAGTGATAATATGGGTGGAACCTGGACCAGTCAAAA
983457
983458
GTTTCAATTCCTCATAGGTACGATAAAAAC
CTGCATATACATATGAGCCGTCGCAGCACATATCAGCG
983525
983526
GTTTCAATTCCTCATAGGTACGATAAAAAC
AGGCAAGAAAACCAATCAAGGATTGGAAAGCGTGTG
983591
983592
GTTTCAATTCCTCATAGGTACGATAAAAAC
GGGGAATACAGTTTGAACATCAAAATCAGACTGACAAA
983659
983660
GTTTCAATTCCTCATAGGTACGATAAAAAC
CGAATTGACTGTATTACCTATTCGGATGGAAGAAGAGT
983727
983728
GTTTCAATTCCTCATAGGTACGATAAAAAC
GGGCTGGATTTGAACTTATCGGCAGAATTGAAATCAGGGA
983797
983798
GTTTCAATTCCTCATAGGTACGATAAAAAC
TTCTGCCTCGGGGAAGGTCATGATATGTTCAAATGC
983863
983864
GTTTCAATTCCTCATAGGTACGATAAAAAC
CTCCTCATTTCTAAGCAATTTTGCCTTTGTAATAGT
983929
983930
GTTTCAATTCCTCATAGGTACGATAAAAAC
TTGTATCATATATTTTTATACTGTCAATAGTAATTT
983995
983996
GTTTCAATTCCTCATAGGTACGATAAAAAC
CTTGGAAGTGCGGAATTCTCCCTTCCAGGGGATGACCC
984063
984064
GTTTCAATTCCTCATAGGTACGATAAAAAC
CCAATAAGGTGTATGATGGGGAATTTACTGTTGATAC
984130
984131
GTTTCAATTCCTCATAGGTACGATAAAAAC
GATAGCACCTATATATTTACGTCCAGTATTAGACTGAT
984198
984199
GTTTCAATTCCTCATAGGTACGATAAAAAC
CTTTCAATACCTCCTCATTTATACTTTCAAAAAGTG
984264
984265
GTTTCAATTCCTCATAGGTACGATAAAAAC
AAGCAACGGGATCAAACCATCCAAAATAGTCATCAAGA
984332
984333
GTTTCAATTCCTCATAGGTACGATAAAAAC
AATGGATTGGATTTTGGAAAATGCTGATATATATTG
984398
984399
GTTTCAATTCCTCATAGGTACGATAAAAAC
TAAAAGAGGATTTAAAGACCTTATTCATCCCATCTG
984464
984465
GTTTCAATTCCTCATAGGTACGATAAAAAC
TCTTTAAATGGTGATATTTCTGATAGACTAGTTCTTA
984531
984532
GTTTCAATTCCTCATAGGTACGATAAAAAC
GTTGTTTTGTGAGGAGGTTTTCAGAAAGTAGATATAT
984598
984599
GTTTCAATTCCTCATAGGTACGATAAAAAC
TCAATAGCGTGATACAATCAAACTTCATGCGAAGCTA
984665
984666
GTTTCAATTCCTCATAGGTACGATAAAAAC
GGAAGAGATGAAGACATCGAATACATCCTTGAAAAAAT
984733
984734
GTTTCAATTCCTCATAGGTACGATAAAAAC
GGTTTAATCGAAGTAATCTTGTCGCCGCTTTTCTTGG
984800
984801
GTTTCAATTCCTCATAGGTACGATAAAAAC
TCAGAGATGATATGACGAATCAAGTTCTAAATGAAA
984866
984867
GTTTCAATTCCTCATAGGTACGATAAAAAC
TCTCTTGCAGCCCGTTCTCCAAAATTATCTTCAAAA
984932
984933
GTTTCAATTCCTCATAGGTACGATAAAAAC
TGAATGTAGCAATTGGGTTTTTCGTTTGGGCTGTCA
984998
984999
GTTTCAATTCCTCATAGGTACGATAAAAAC
CTAATTCAATATTGATTAAATGACTCTCTATAACAAA
985065
985066
GTTTCAATTCCTCATAGGTACGATAAAAAC
GTCCAAAAATGGAAAGAAAGATATCCGATGATGAAGA
985132
985133
GTTTCAATTCCTCATAGGTACGATAAAAAC
985162
Left flanking sequence : Till position 979773 (length
bp)
TAAATAGTTATAGGATATGTCAATATTTGCATTAATTTCAATTTATATTATAGGCACAACAAAACTATGA
TGAAATTAGCACGGGGACGGTATCTATTGT
Right flanking sequence : From position 985162 (length
bp)
CCCATAGAACTCGCTAAACTTCTGCTTTATATTTTAACTCTATATAAAACAAAAATCAACAATCAGAACA
AAAAAACTCTCTCAAGAGACCTATAAATCA
Print the CRISPR sequence : From position
bp To position
bp