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CRISPRs details
NZ_CP019870_12
Flanking alignement tool
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NZ_CP019870_12                                                                                                                 
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Strain :
Clostridioides difficile GCF_002007885
RefSeq :
NZ_CP019870 (chromosome circular)
CRISPR id :
NZ_CP019870_12
DR consensus (29 bp) :
ATTTACATACCACTTAGTTAATATAAAAC
Number of repetitions :
19
Begin Position :
2226341
End Position :
2227556
2226341
ATTTACATACCACTTAGTTAATATAAAAC
AAATTTCAAAGCGATTGGACAACGAATAAAAATTGCA
2226406
2226407
ATTTATATACCATATAGTTAATATAAAGC
ATATTTGTGTCGATATATAGTTCTAACTAAGTATAAG
2226472
2226473
ATTTACATACCTCATAGTTAATATAAAAC
ACATATTTTACATGTTTGAAGATTTTATCAGAAACCCT
2226539
2226540
ATTTACATACCACTTAGTTAATATAAAAC
CAGAACTAATAGGAAAAGAAGGTTATACGCCAGAGAT
2226605
2226606
ATTTACATACCACTTAGTTAATATAAAAC
TTGATATATTTTTTTATGGTACATATTTTAAAGTAA
2226670
2226671
ATTTACATACCACTTAGTTAATATAAAAC
TATGAGTAAAGTATTTACAGACTCTAAAGACTATGAA
2226736
2226737
ATTTACATACCACTTAGTTAATATAAAAC
GATGAATATCATAAGATGTTATGTAATTCATTATATG
2226802
2226803
ATTTACATACCACTTAGTTAATATAAAAC
CGGCAACAGATTTAATAAATATATGTGACCTTTTAGA
2226868
2226869
ATTTACATACCACTTAGTTAATATAAAAC
TCAGCTAGATTATTTAAATGATGCAGTCAAAGAATT
2226933
2226934
ATTTACATACCACTTAGTTAATATAAAAC
TAGGTCTTATATTTATTACTAATAAATTAAAACCTTA
2226999
2227000
ATTTACATACCACTTAGTTAATATAAAAC
TTTTTATCCAATCAAGATGTAGGTTCAACAGTAAATA
2227065
2227066
ATTTACATACCACTTAGTTAATATAAAAC
TTACTAATCTCTTTTTCTGTTAATGCTTTCAAAGTAAT
2227132
2227133
ATTTACATACCACTTAGTTAATATAAAAC
AAAAATAGTGCTAAGTCAAGATATATAATAATAATAA
2227198
2227199
ATTTACATACCACTTAGTTAATATAAAAC
TTTTACCTTTTCAGAGTTTTATTTGTATTGTTGTG
2227262
2227263
ATTTACATACCACTTAGTTAATATAAAAC
TCTTTTAAAATTACTGTCTGTCTCCCTACTGAACTTGT
2227329
2227330
ATTTACATACCACTTAGTTAATATAAAAC
TTATATTTTATATAAAAGAGTGTCATATCTTTAATAT
2227395
2227396
ATTTACATACCACTTAGTTAATATAAAAC
TCTATCAACCAATGCTACACCATAGGGAATTAGGAAA
2227461
2227462
ATTTACATACCACTTAGTTAATATAAAAC
TTGCTAGGCAATCCATTTTTAGAAAGTACTAAATTCT
2227527
2227528
ATTTACATACCACTTAGTTAATATAAAAC
2227556
Left flanking sequence : Till position 2226341 (length
bp)
TATGTGGTAATTATTTACTACAAATGATAAAAAATAATTATATTTTAAAGGAGAAAATGCTGTATAAATT
ATTGGGGTATTTTACCTATACTTGTTGCAA
Right flanking sequence : From position 2227556 (length
bp)
CCCAAAATAAACTAAGTATTTTCAGTACTTACACACATACAACTCTCTCAAATTTGCAGTGAACCATGAG
TAGTGCAATTGATAACATTTATCATACACC
Print the CRISPR sequence : From position
bp To position
bp