Institut de Génétique et Microbiologie

CRISPR details


Home About CRISPRs News FAQs Help Contact Us Examples IGM
Université Paris Sud

Navigation

Home page
CRISPRs database
Browse CRISPRs
BLAST CRISPRs
FlankAlign
CRISPRs utilities
My CRISPRs DB
CRISPRs finder
CRISPRs comparison

Other Tools

CRISPRcompar
CRISPRtionary
CRISPRfinder

GPMS Links

GPMS Team
Tandem Repeats DB
MLVA Web Service


NC_000918_9                                                                                                                 top


Strain : Aquifex aeolicus VF5 RefSeq :NC_000918 (chromosome circular)
CRISPR id : NC_000918_9
DR consensus (30 bp) : GTTTCAACTCCACTACGGTACATTAGGAACNumber of repetitions :5
Begin Position : 1379598 End Position : 1379894

1379598ATAGCTTCTTCCACACGGTACATTAGGAACAAAGAAAATCCAAGAAATGTCCACGCCCTCCGAAGTCA 1379665
1379666GTTTCAACTCCACTACGGTACATTAGGAACTTATTTAGCATTCAAAAAAGGAGTTCTTGTAAATACA 1379732
1379733GTTTCAACTCCACTACGGTACATTAGGAACAAGTGAGGAGATGGGAAAGACATGAGGAAATTCTAC 1379798
1379799GTTTCAACTCCACTACGGTACATTAGGAACTGCTGGATTTCCCTTCCTTATTTTAATGTTCATTAC 1379864
1379865GTTTCAACTCCACTACGGTACATTAGGAAC1379894
Left flanking sequence : Till position 1379598 (length bp)
AAGTGGAAAGCAATACGGGAAGTGCCAAAAGAAGCGTCATTTCAAGTGCTCTTTGCCCTAAGGAAACTAT
TAAATCCTGTTCCATATAAAGATTTTTACC
Right flanking sequence : From position 1379894 (length bp)
CCTGCGTGCCTGTGTCTAAAAAATAACGTACTATCAATAACTTATTAGACACCCGACCCTCACGAAACGA
ATGTTAATTTCCGCTAACCCAAGGTTCTGC
Print the CRISPR sequence : From position bp To position bp